FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003655126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACCTGAGATGTGCTTGGCCCTGTTCTGGGTGCTCTGCCAGAGTTCACT53.937007874015748No Hit
TTATGAACTAGCCTCCTAGCTCGTGCTTCCCTCATTACCCTCCAGAGTTA32.3622047244094486No Hit
TCGCAGGAGATCCTCGAAGCCGAGGCCACGCTCGACGCTCTGGGCTGGCA32.3622047244094486No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT32.3622047244094486Clontech Universal Primer Mix Long (96% over 26bp)
CTTTTTAATGGGGTTGCTTTTCTTTTGTATATTTGTTTACATTTCTTATA21.574803149606299No Hit
GTGCTGGTCACCATCATCTTCATCTACGAGAAGCGCCGGAAGCCCGAGGA21.574803149606299No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA21.574803149606299No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.574803149606299Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGAGAATTTCTTTAAAACCAAGCACATTGCTAAATAGCAACATTATACTC21.574803149606299No Hit
GTCCAGTTCGACACGGCCAAGCCCGACACCAGCAAGATCCGCTTCACCGT21.574803149606299No Hit
AAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCT21.574803149606299No Hit
GGTTGAGATGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAAT21.574803149606299No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTT21.574803149606299Clontech SMART CDS Primer II A (100% over 26bp)
CTTTTAGCCTGCATGCAAGTATGAAAATGAGATTCTGGGAGCCGAACATG21.574803149606299No Hit
GAGTTAAGATGGCGTCCTCAGCGGAGGGGGACGAGGGGACTGTGGTGGCG21.574803149606299No Hit
GTATGAAAGGGCTTGGAGAAAATATCACTGAATGGTCTCAATCATACTTT21.574803149606299No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC21.574803149606299Clontech Universal Primer Mix Long (96% over 26bp)
CAGAAGGGGGGTGAGTCAAGAAATGGGAGGAGAGGGCTTCAGGAAAGAGG21.574803149606299No Hit
TCACAGGACAATCTTAAAGGAGCTGGCAAAGTCTGGAGAACGGGAGATGA21.574803149606299No Hit
TCCAGAGGGAGCACAACCATATCAACACCTTGATTTTGATCCAGTGACAT21.574803149606299No Hit
CCCCAAGGGACAGTGGGCAATTCCTGCAGACATTTTTGATTGTCACATCA21.574803149606299No Hit
ACCCAGCCCTTAGAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGC21.574803149606299No Hit
ATTTTAGGTCCAGCACACTGCTTAGTGGTATCATGGAGACAAATAATGTG21.574803149606299No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTT21.574803149606299Clontech Universal Primer Mix Long (96% over 26bp)
ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATC10.7874015748031495No Hit
CCCTAAATGCTGGGATTCCAGGTGCAAGCCACTGCACCCAGGAACCCTTT10.7874015748031495No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTAAAGG10.7874015748031495No Hit
CCTTCTCCAAGGGCTCCTGTGACATATAGTCAGAAATGGCCTCCCTGGGC10.7874015748031495No Hit
GGCCACCACTGCCGTCGTTCCTGTTGAAGCGAATCGCGCGTCCGTCTCGC10.7874015748031495No Hit
GCTCCAATTTCAACTGTTACTTGAGTGATAATATATCTGATATTTGAGAA10.7874015748031495No Hit
TCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
GAAGAGATGGAGGCAGAAGAAGCTGCTTGTCATCCATCAGTTCCACAAAC10.7874015748031495No Hit
AATCTTGATTTTACCACAAAAATCTTTGATGGCAATTGGGTCCCCAGGTC10.7874015748031495No Hit
CTGCCTGCCTTGACCTCCCAAACTGCTGGGATTACAGGTGTGAGCCACCA10.7874015748031495No Hit
AACCAGAGTTAATCATTCACAGGCCTTTTTGCCTGAAATAAGATGCTTTT10.7874015748031495No Hit
GTTCTCCTACGCCAGCGACTGTGCCAGCTTCATATCCCCCGTCATCAAAT10.7874015748031495No Hit
ATACATAGTAATCTTTTCCAGTTATGTCTGATTAAGATTACTATGTATTT10.7874015748031495No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
CGCTTCGCACGCCGGTGCGAGTGAGAGAAGGGCCGCGCGCCTCAGTTTCC10.7874015748031495No Hit
CCATTGATTTCTATGATATAGCTGGCATAAGGTTTACTCTGCGTACAAAT10.7874015748031495No Hit
GCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGG10.7874015748031495No Hit
AGACTGTTAAAATTGGTGATTATGGTAATATGGTCATGTGAATCAATTTT10.7874015748031495No Hit
CGCCTCACCGGGTCAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACC10.7874015748031495No Hit
TTCCTGTCCTGGTGCATGGTGGTCGGACGAAGGAATTGTTGGAAAATTTT10.7874015748031495No Hit
TTACAGCATCCCACTTCCTCATAATGATCAGAGTCAATTATCCTTGCTGG10.7874015748031495No Hit
CACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCACATGTACTCT10.7874015748031495Clontech SMART CDS Primer II A (96% over 26bp)
CACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCT10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
TTCTTGGCCATGGCTGATCAGAAAAGGCTCAGTTGCTCCTGGAGTCCACA10.7874015748031495No Hit
GTAGCTGGCATCCCCTCAGTGGCTGCTTCATATGTACAGCCACTGCCATC10.7874015748031495No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG10.7874015748031495No Hit
AGATGTGACAGATGGCGTCCTCCTGGCCCAGATTATCCAGGTTGTGGGTA10.7874015748031495No Hit
CTCGAAAGCATTGGAATGGAATGGACTCAAATTGAATGGAATCGAATGGA10.7874015748031495No Hit
GAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGT10.7874015748031495No Hit
CCATTGGAGGGCAAGTCTGGTGCCAGCAGCGAATTACCGCGGCTGCTGGC10.7874015748031495No Hit
CTGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.7874015748031495No Hit
GCGCGCGCGTGCGCATGTTCGCCAGTCCCTTGCGGCCCTCGGTGGGTGCC10.7874015748031495No Hit
CCCAAGTAGCTGGGACTACAGATGCGTACCACCATGCCTGGCTAATATTT10.7874015748031495No Hit
CCTTTACAGCAAGTTTATGAGCAGATACACAGATATATGTAAAGGGGGGA10.7874015748031495No Hit
CAGAAAGGCTGGAAGGAAAGGGGGTGGGTTTGAAGGCCAGGGCCAAGGGG10.7874015748031495No Hit
CTCGCAACCATGGTGGAAGGCAAAGAAGGAGTAAAGGCATGTCTTCCACG10.7874015748031495No Hit
GGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTG10.7874015748031495No Hit
GACAACAGGACCTGGACGAAATTAAAATTGCTAATTAAGTTTCGGGCACA10.7874015748031495No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATAC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
CTCATTGACAGGGGAGACGCTGTTGTCATCAAAGTAGTGCCACTGGCCGC10.7874015748031495No Hit
TCAGGCTAGTAGTATATTCTATTTACAAAAGCCAGGGAGATTTATAAAAC10.7874015748031495No Hit
AGACAGGGTTTCACTATATTAGCCAGGATGTCTAGATCTCCTGACCCTAA10.7874015748031495No Hit
GATAACTAGAAGGGCAAGTTTAAGTCACTTACCCAAGATATTTTAGTCCT10.7874015748031495No Hit
AGCTTAGAGAAACCTCCAGGAGACTGCTACCATGGCAGAGAAGCCCAAGC10.7874015748031495No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
GCTTTGGAAAGCATCTGGAAAAGAAGAAGTTTGCTACAAAAGATCTCACT10.7874015748031495No Hit
GTCACACAGACTGGAGTGTAGTGGTGCAGTCCTGGCTCACTGCAACCCCC10.7874015748031495No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTTAAACAACT10.7874015748031495No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT10.7874015748031495Clontech SMART CDS Primer II A (100% over 26bp)
GGGTGTAGTCGTTAAAGCTGACAACGTCGATATTGATGCCCTCAGCTGCG10.7874015748031495No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTCTTCCTAA10.7874015748031495No Hit
TCTTCAAATGGAATGGAATGGAATCATCGCATAGAATCGAATGGAATTAT10.7874015748031495No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC10.7874015748031495No Hit
AGGCAGAACCCCGAAGATACGTATTTCCAATACAGAAAAGAATTTTTAAT10.7874015748031495No Hit
CGACGCACACTTCACGCCCTCGAAAACGCGTGAAACTAGTTCTTCTGTCT10.7874015748031495No Hit
GGGCGGGATTCTGACTTAGAGGAGTTCAGTCATAATCCCAAATATTGTAG10.7874015748031495No Hit
CCTCTGAGACCCACCTTGCTCATAGACTATTTCTGTGTTTATGAGCAAGG10.7874015748031495No Hit
TCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAG10.7874015748031495No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCTCTTATAC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTCCCAGTGGCCTATAGTGATACCCCACCCCCTTACATTTCTGACCC10.7874015748031495No Hit
GAGGACAGAGTTCTGGGGTGGAGTGAGAACAGACAGAGGAGGCTTCAAAG10.7874015748031495No Hit
GGCAATTCTCCTGAGCAGTGACGGCCAGAACCTGGTCACCGGAGGGGACA10.7874015748031495No Hit
TCAGAGGAAAGTGTCATCAAGTAGCAGGAGTGCCCCGTGTAGCCCCTTAC10.7874015748031495No Hit
GCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTCAA10.7874015748031495No Hit
TCCAAGGAAAGCAGCACGTGGTGTCTGTGGAAGAAGCTCTCCTGGCAACC10.7874015748031495No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCGCCCACC10.7874015748031495No Hit
GTATGAAAACAGAAGTTAACCATTAGAACTCCCTAAGACTGAAATAGGCT10.7874015748031495No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC10.7874015748031495No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10.7874015748031495No Hit
GTCTCAAACCCCTGAGTTTAAGTGATCCATCCATCTCGGCCTCCCAAAGT10.7874015748031495No Hit
CTCCTAGAGGCTGAATACAACGCTAATTTAGCACTTGAGCAACTTTCACA10.7874015748031495No Hit
CAAGTGCACTATCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATA10.7874015748031495No Hit

[WARN]Adapter Content

Adapter graph