FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003655240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCAGCGTGGTGTCGATCTGTGCGGCGGGGGTGGTGTGCAGCAGAT48.51063829787234No Hit
CAGCGGTACGCTGCTGGCTGCGCAGGGCGAACGCGTCCTGATCGGCGCGG24.25531914893617No Hit
CCTCGAAAGTGAAGGTGATTACTCGTGGTGAAGCTACGCGTCTGATCAAC24.25531914893617No Hit
TCCCAGAGCTGTTTGCCGCCCCAGTAGTTGTCGTTGCGCGCCATCACCAC24.25531914893617No Hit
GATTCGAATGGTCGCGCGGCACTTGAGCCGGCGACCGGTCCTCCGTCTGT24.25531914893617No Hit
GCTCAGGAAGTCATCGTGCGTGACTTCCCTGCCCTCTTCCGACACGACTT24.25531914893617No Hit
AGGTAGAAGTCGTCGCTGCAAAACGGCTCGGCCTGCAGCGCGGGCGTGTC24.25531914893617No Hit
CACCACCACCGCGCGCATCGCGGTTTGCAGCGGGTTGAGATCCTTGCCTT24.25531914893617No Hit
GCGCCGGACCACATGTTCGGCGTCGTGCTGCTCAACGACTGGAGCGCGCG12.127659574468085No Hit
GCTCATTGCCATGTCCACGGCAAGGAAGCTTTTCCCCCTCGCGGAGAAGA12.127659574468085No Hit
CTCCATAGGAAATGCTTGGCTTGATAGCCCGCCAGCGGGCGGCGGTTGCC12.127659574468085No Hit
ACCTCCGCCTCCCTGGTTCAAGCAATTCTCCTGTCTCAGCTTCCCAAGTA12.127659574468085No Hit
GGCGCAGGCGGATCAAGAAAACGCGCATCCAGCCTGCTTCCCAGACGTGG12.127659574468085No Hit
CGCTCGAGCAATACCTGGACTGCGAGCACATCTTCATCGCGCAGGGCAGC12.127659574468085No Hit
CTGCCGACAGTCCGGCACCTTTGCCGATCAGGGTGTGTGCGCTCAGGCAG12.127659574468085No Hit
CTGCAGCGTCACACCGTGCCGGCGCGTTTGGCTTCGAGGGATTCCCAACG12.127659574468085No Hit
GTAAGATTTATCAGGAAGACCGAAAGAACTAAGCTTCCACTGGTTTCAAT12.127659574468085No Hit
AACCAGCATATGCACCGCATGTTGCGCAGTGAGTGGCATGGTGCAGCGGC12.127659574468085No Hit
GGGTTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTCAGGTGA12.127659574468085No Hit
GGCCGATCACGGCATCACGGTGGATGGCGTCAAGGTCGACGTGGCCAAGA12.127659574468085No Hit
GTCTACCAGTTCCGCCACTTTCGCGCACGGGCCATTCTACCCCTGCGCGG12.127659574468085No Hit
GTTGTTGACGGCGAGGTAGCGCAGGATGAAGTCCCGAAACACCGCGGCGT12.127659574468085No Hit
GCCTTACTCACTTTCCCGTCACATCCTGGAACATCTGCGCAAACTCACCA12.127659574468085No Hit
GAAGACGCCTGCGAGATGCTCCAGTTGCTGCTTGAAGACTACGGCGCCAC12.127659574468085No Hit
CAATGGCGATGCCTGCGCTGCCGTCGGCTGTCGCCAGCATGGCCACGGAT12.127659574468085No Hit
GCATGTCGACGAGCACCATGCCGCGCGTGTTCTGCGCCAGCACGTAGATG12.127659574468085No Hit
CGATCTACAACCCGTTTGAATTTCAAGACGCCCAGATCAACGGTTCGGAC12.127659574468085No Hit
CGGTCGCCGTGGATGACATGCGCCCCGGGTTAGACCGCGAGCGCGAGGTC12.127659574468085No Hit
TTACACGAGACTGTCCTTTACCAGAAGAAGACATGACCGGTTTTACAAAG12.127659574468085No Hit
TCCTCCAATAACTTGATCAGCTCTACCCGAGTTGCCAGTCCTGGATTGAG12.127659574468085No Hit
GAGCTGTTTCATAAACTCATAGATTTTTTTATGTCTAATATCTTCCCAGA12.127659574468085No Hit
GATCGGCGACTTCACGTCGACCATTGGTGACCCGTCCGGCCGCAACGCCA12.127659574468085No Hit
TTCCTGCAGAACCCGCTGGGGCGCTTCACCCTCGAGGAAGTGGTGAAAAA12.127659574468085No Hit
GTGCCGGACCGGCTCACGCTGTGCGTCTGGTCGCCCGCGCTGGACCGCAC12.127659574468085No Hit
GCGTATTGCCGTCACAGCTTGCGCATTTAAAGTAATAACCGTATTTGCCA12.127659574468085No Hit
GATCAGCAGCGTGGTGTCGATCTGTGCGGCGGGGGTGGTGTGCAGTAGAT12.127659574468085No Hit
ATCTACGGCGTCGCTGCAGAGTTTGGCGCGAAAGCCCTGACCATCTGCAC12.127659574468085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)