FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003655573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGAACAGCGGCTCGATGTAGAACGGCTTGTCGGCCTGCACGATGAA35.769230769230769No Hit
CTCTGTGACTTGATTGCAAACATCACGAAGGTGTTTCTGAGAATGCTTCT35.769230769230769No Hit
ATCACGCCGGCGTGGGTCTGCTTCTTGTCGGCCGCTTGGGCCGTGTACAG23.8461538461538463No Hit
GCCTTGAGAAAATCCCGCTGCTCGGCGGTCTCCACACCTTCGGCAATGAC23.8461538461538463No Hit
GTGGAGCACACTCCTGCGCTGGTGCACTGCGGGCCCTTCGGCAACATCGC23.8461538461538463No Hit
ATCGGGAACTGGTCGGTGCGGTCGATTTCGCCGGCACGCGGTGCCAGCTC23.8461538461538463No Hit
ATGCAGCGTTGCAAGGCGATGACGCCAAGCTATGGCAATTCAGCGTTGAC23.8461538461538463No Hit
ACCCATCACGGACAGCGCCTTCGGCACGGGAATGCCCAGTTCCGCCGCGG23.8461538461538463No Hit
GTGCAAGCTCCAAGTTCGCCCTACCATCCGACACAAGGTCCCGTCCTCCT11.9230769230769231No Hit
GTGCTGGGCTTGTGGATTGCCGGTGCGATGCTGGTCTTCGGAATGCAAGA11.9230769230769231No Hit
GGGCGGCAGCGTCTTGAGTGCCTTGAGATCGACGTCGGCCACCTGGCATG11.9230769230769231No Hit
CCCGTGCCGAGCGGGCCACGCGGGGGCGGGTGCCGGCGTCGCGGCGGGCC11.9230769230769231No Hit
AGGGAGCAGGTCTCGACGCCTGAGTTCGTCGAGCGGCTGGCCAGGGCATC11.9230769230769231No Hit
GAGTCGCCCCGGCGCGTTCTTCATTTTGCTGCTGAGCGGACTGCTTACGC11.9230769230769231No Hit
GCCAAAAAGGGTGGATTTATCCGTATTAACCCACAAGATGCAGGCGTGCC11.9230769230769231No Hit
CACTGGTGCCACACTAGGAAGTACTTTGCGACCCCTGTGCCACAGAACAT11.9230769230769231No Hit
GCGTATAACCGGGATCCGGCCAACGCGGGCAGGCAGCTGACCATGCTGGA11.9230769230769231No Hit
CGATTGATCGCCTTCTAAATCCTTCTCAACAAGCGGTTGAATAATGGAAA11.9230769230769231No Hit
ATACTGTCGGCCGCAGGTCTACGAAATGCGCAACCTGGCCAACGGCAGGA11.9230769230769231No Hit
CTTGTAACGCTTGCTGCGCCAGTTGATTGAGAGGCAATAAGCGGGGGCGG11.9230769230769231No Hit
GGACCATGCCCTCTGACAGCTCCCTGAGTGACAGTTAAAACTTTAAAATC11.9230769230769231No Hit
GTGCTCCAGGACGGCGACGAGCCGACGGTGGTCGTCGCCCACAGCTACGG11.9230769230769231No Hit
TCTCCGAACTCAAGGACAGCCTCGACGAGCTTTGGGAGGTGCCGCCGCGC11.9230769230769231No Hit
CATCTGCGCTGCGATTGGCGACTTGGCGATCGCTGTCGTCGCGATTGGCC11.9230769230769231No Hit
TTATTAGACCTATCATTGTAAAATGATTTTTTTTCCAGAATGACATTTGA11.9230769230769231No Hit
GACTATCTGATCACCGAGGCCGGATTCGCCGCGGATATGGGGGCGGAGCG11.9230769230769231No Hit
CTCCTCGCTCATGCCCAAGGCCTTGCAGAAAGTGATGAAGTATTTGGCCT11.9230769230769231No Hit
GTCCATCACCTTGAATTGCAGGTCGGTGGTCCAGTACTTGGCCATCGATG11.9230769230769231No Hit
CGCTCATGGTGTGTTGCTCCTGCCGATCTTGCGGATATTGCCGAGAGGGG11.9230769230769231No Hit
TCGTAGCCCTGACCGGAGGCCGGGGCGAAGCGCTCGCCGGCCGGGCGCAG11.9230769230769231No Hit
GTGCGTTCGACCCGGGCCAGGTAAGCGTCGTCGTAGACGCCCGGCCGAGG11.9230769230769231No Hit
CTTCAATCCCAGGGAGGACTGAGCCTACTTGGGCTGCCTTCTGTTGCTAC11.9230769230769231No Hit
CCGCTGGACGTTCCCGACAGCGTGCTCGGACAGCTGGGCAACCGCGTGCA11.9230769230769231No Hit
GCACTGGGGAATCTTACCACAAGCACCCAGCCCAGGAAGGGCTTTCCATC11.9230769230769231No Hit
GCTGGCCGATCTGCTCGGCCAGGCGCAATGCCGCGTGGCAATGGGCCAGC11.9230769230769231No Hit
GGCATGGACATCGACTAAATCAACTAAGCGAGCCAACACATCGCGCGCCA11.9230769230769231No Hit
CGCGATGGCCGATCAGCCCGCTGACGGCCAGCAGCGGCAGCCCGACGAAG11.9230769230769231No Hit
GCCAAGACATGATTCAAGCGCCGAAATAACACGGTGGGGCGTTCTGCATT11.9230769230769231No Hit
GGTCAAGAGGGCCTTACCCAAGTCAATAGGCAGACCGTGCAGCAGCGCGG11.9230769230769231No Hit
GATACAGTCCCTGAAATTTTGTAAACTGCAGGATCAGTAGTAAATGTAGT11.9230769230769231No Hit
GCGTTGAGACGCTTGGCAACATCCTCAAAGGTCCGAATGAACTCGCGTCC11.9230769230769231No Hit
GTTGATGGCAGGCGCTTCTTCCCATTTCTGGAAGTCTGACTGCAATGCGA11.9230769230769231No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)