FastQCFastQC Report
Tue 10 May 2022
EGAF00003655702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190535
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8630.45293515627050146No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA3500.1836932846983494Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG2250.11808854016322462Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTTTTCTATCTGAGCTCTTCCTCCTCCACATCACAGCAGCGACCACAGC2060.10811661899388565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)