FastQCFastQC Report
Tue 10 May 2022
EGAF00003656479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003656479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249412
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACCGAAGATTCATCTCGTATG7190.28827802992638685No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4230.16959889660481453No Hit
ATACACATCTCCGAGCCCACGAGACGACCGAAGATTCATCTCGTATGCCG3930.15757060606546597No Hit
CTTATACACATCTCCGAGCCCACGAGACGACCGAAGATTCATCGCGTATG3590.1439385434542043No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA3130.12549516462720317No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3130.12549516462720317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)