FastQCFastQC Report
Tue 10 May 2022
EGAF00003656509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003656509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512194
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG12750.24892911670187468No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA6880.1343241037575606No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG5890.11499548999012092No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA5720.11167643510076261No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTCACCTCCCATCTCGTATG5660.11050500396334202No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA5390.10523356384494938No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA5220.10191450895559104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)