FastQCFastQC Report
Tue 10 May 2022
EGAF00003657509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11169
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG350.31336735607485No Hit
ACACATCTCCGAGCCCACGAGACTTTCGCCTCGTGATCGCGTATGCCGTC300.26860059092130006No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGCCTCGTGATCTCGTATGCCG280.25069388485988003No Hit
ACACATCTCCGAGCCCACGAGACTTTCGCCTCGTGATCTCGTATGCCGTC260.23278717879846003No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA210.18802041364491No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA190.17011370758349No Hit
CTTTAATGGTAACCGTACTTTCGCCCACTATGCGACCTTCCGCCTCCTCG190.17011370758349No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGCCTCGTGATCGCGTATGCCG180.16116035455278002No Hit
CACATCTCCGAGCCCACGAGACTTTCGCCTCGTGATCTCGTATGCCGTCT170.15220700152207No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG170.15220700152207No Hit
CATAGAGATGGGGGAGGAGTCAGGGCATGGTGGCCCACGCCAAAGTGCTG150.13430029546065003No Hit
CCCCAAGGGTGAGCCAGGAGATCCAGTGAACCTGCTCCGGTGCCAGGAAG120.10744023636852001No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT120.10744023636852001No Hit
CCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCG120.10744023636852001No Hit
AGTCTGTACACCCTTCTCAACAACTTCCTTCACATCTGCAGGCTGCACAC120.10744023636852001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)