FastQCFastQC Report
Tue 10 May 2022
EGAF00003657510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11169
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2772.48007878950667No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG950.8505685379174501No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT520.46557435759692006No Hit
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGC320.28650729698272No Hit
GGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTA270.24174053182917005No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT220.19697376667562003No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG220.19697376667562003No Hit
CCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGAT200.17906706061420002No Hit
CTGCATAGCGACCATTGAGATTTGATCGGTAACAGGATGCATACCACCAG180.16116035455278002No Hit
GCCTCAGACACTGCATAGCGACCATTGAGATTTGATCGGTAACAGGATGC180.16116035455278002No Hit
CTCTCAGGCTGCGTCCAGCGACAGTGCCCAGGGCTCTGATGTGTCTCTCA170.15220700152207No Hit
TCACTGCACAGTTGCTGTTGCTTGAATCGTGGTCAGCGTCATAGGTGGTA160.14325364849136No Hit
ATCGAAGCATCATCCGAACCCTGCGGTAGGGGTGGCCCACACCACGGCCT160.14325364849136No Hit
GGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCCCAAGATCCAAC150.13430029546065003No Hit
GCCTGAGGCCCAGTCAATGCCATATTTGTGGGCGGCAGCCTCAGACACTG140.12534694242994002No Hit
GTTCCTGTCTCTTGTATTTTCATCCTGTTAATTTCTATGGCTTCCCCTCT120.10744023636852001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)