FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003657854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATAGCTGGCCACGCGGATCCCGCCCTGCTCCTTCGGGAGGCTGAGCA21.5384615384615385No Hit
GAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTA21.5384615384615385No Hit
CTGAAATACCAAGTGGTAATGAGCCTTTCTGTTTGCAACTCTCAAATGGT21.5384615384615385No Hit
AATTACACCAGGGATACTGTCAAAGGGATAGCAGAACAATTGGGGCCCAC21.5384615384615385No Hit
GCTGGGTATGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG21.5384615384615385No Hit
ACACCGGCGCATCCTTCGGACGGCCCGCGGTGGACACGATCTCCTGGTCG21.5384615384615385No Hit
ATTTCATTCCAATCAATTCCATTCCATTGTACTCCATTCCTTTCCATTCC21.5384615384615385No Hit
CCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTA21.5384615384615385No Hit
TCTATACACCAACAATTTTTAAGCTGAGAGTCAAATCAAGAATGTAATCC21.5384615384615385No Hit
CACTTAGAGAGGTCACATGGGCATGGACTAACGAGGATCAATTCAAACCC21.5384615384615385No Hit
GCCGAGGAAGACTCCGGAGCGGCGGCGTTCGGCGGGAACGAGGACCGCCG21.5384615384615385No Hit
ACACTGCTACTTAAGCTGATTAGAGTGTTCTCAAGTTTATCTCTGTAATA21.5384615384615385No Hit
GTTTAGATATCTATTTCAGTATTCAGCTCCAGCTCACTCTACCTCTAATA21.5384615384615385No Hit
GTGCTGGGAAACTAGTCACTCAACACCCAAACTGAATCCAGCATTTGTGG21.5384615384615385No Hit
GCCGCACGACGAGCGGCAGAAGCTGCCGCCGATGATCAACCTCGAGCAGT21.5384615384615385No Hit
CCATTTCACAGTCCTGTTCTTTATCAGTTTCAGGCTTTGCGAAAGACTTG10.7692307692307693No Hit
CTGTACGAGAAAAAGGAGCGTAGCGGAGGGTGAAGGGGCGCAGTAGACGG10.7692307692307693No Hit
GGCCGGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCAT10.7692307692307693No Hit
GGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGT10.7692307692307693No Hit
CTGAAATAAAGAGGTATTCCAGTTTTTTTAACACACATAAAATAAATGAA10.7692307692307693No Hit
GCCTTTTTATTCTGGTTGAGGCAGATCTTTTCTCTAACTATTTTTGTTGA10.7692307692307693No Hit
GTATTTTAACCTACATAACTATTCTCATCATTACACAAAATTTAAGTGAA10.7692307692307693No Hit
CTTGAGTATAGCACAGAAATAAGAAAAGATTCATTGGAGATGATAGGAAG10.7692307692307693No Hit
CTGGGCGACAGAGTGAGACTCCGTCTCAAAAAATAAAATAAAATACAAAA10.7692307692307693No Hit
GGGCGACGGCGACCGGATCGAGGCGGGTGGTGTTATCGACTGTCGCGGCC10.7692307692307693No Hit
GTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACG10.7692307692307693No Hit
TGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCT10.7692307692307693No Hit
GTGTTTCACCAAAGCTTTAATTGTCCCTCTGTCCCAAGAATTCAGTGGGT10.7692307692307693No Hit
GCCTCAGCCTCCCAAAGTGCTAGGATTACAGACATGAGTCACCGCGCCTG10.7692307692307693No Hit
GGATATGATATTCAGAGAGGTATACAATTTGGCTTCTGACAGCCAGAGAA10.7692307692307693No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGCCGTGACCGC10.7692307692307693Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACTACGGCGTTCGCAACAAAGTGTGGGTAAACACCGTGTCGCAATCGCCA10.7692307692307693No Hit
GCGAAATCCCCAAAGCTAGCCAAATATCCACTTGCAGATTCCAGAAAAAG10.7692307692307693No Hit
GACTAATTTTAGCTTTAAAATTTTGTTTAAGGTAAGCTCGTTCTTTTAAG10.7692307692307693No Hit
GTATTCCAGTACTGTCACTCCAGCCATGCACTGAGAGGCGGAGCCACCCA10.7692307692307693No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGA10.7692307692307693No Hit
GGCGTAAATCTTCTTGACCTTGGATTAGGCAATGTTTACTTGGATATGGC10.7692307692307693No Hit
GGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTGTCTCAAAAAA10.7692307692307693No Hit
CTTGATTAGTTATGCAATTTCTCCTGATATCAAACAACTCAATCAACGTT10.7692307692307693No Hit
AAATGAAGCTGTGAATGTACTTTTTCTTGTATCTTTATGCATATGTATAA10.7692307692307693No Hit
CTTGGATGGTAGTTTGTATTTCTGCAGGGTCAATGGTGATATCCCCTTTA10.7692307692307693No Hit
TCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCAAGTG10.7692307692307693No Hit
GTTATAGAGACACTAATCCTTAAATATTGCTAGACATTAATGATTCATTT10.7692307692307693No Hit
ATAGTCAACAAGTACCGTAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.7692307692307693No Hit
CCGCAGGACCGCGACCTCGGCAAGGGCGTGGCCGCCAGCGGCCCGCTCGC10.7692307692307693No Hit
CTCACATCCACATCTCTACCTCTCTATGCAGTGGCTTCATGGCTCGATGG10.7692307692307693No Hit
GTATATATTCTTTCACGCTTAAAAAGTTTTAATTAAAATAGGAAAGAAAT10.7692307692307693No Hit
TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGA10.7692307692307693No Hit
ATCCCTCTACCAAACACCTCTTTCCTCTGTCCCCTTGACCCTTTTATCTG10.7692307692307693No Hit
TCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCT10.7692307692307693No Hit
AATCTGAGCAATACCAAAATCTTTACATTTCTTTCCTTCATTCTATTTAC10.7692307692307693No Hit
GGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGC10.7692307692307693No Hit
ACCATGCTCAGCCTGTGAAAATATTTTTCATAATAAATTCAATGTATTTA10.7692307692307693No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTGCTTTTTATTTTTTCCG10.7692307692307693No Hit
GCTAATATGGGTATCAAATAAAGCTGAGCATTAACCCTTGTCCATGGCAG10.7692307692307693No Hit
GTCATAGAATGGAATCGAATGGATTCATTGAATGGAATCAGATGGAATCA10.7692307692307693No Hit
GGGTAGAAGAGAACGTCAGGGGCCTGCAGCTGCCAGTTATATCTCTCAGG10.7692307692307693No Hit
CATTTGTAATACGGCCTCTGTGTGTTGAGGTCGCTGTAGACATCCGACCT10.7692307692307693No Hit
CGCATCAACGCCGCGGGCCGGCTTTCGGACATGACGCTGGGCATCGAATG10.7692307692307693No Hit
GCATTGCACAAAGCACTTTTACTATTTATAACACAGAGAGCCACATCACA10.7692307692307693No Hit
AATGAAAATATTCTCAGATAAAAGAAAACAAATAGAATCTATGACCAGCA10.7692307692307693No Hit
AAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC10.7692307692307693No Hit
ACATTATATTGTCAGCAACACCTCAATGCTTTGCAAGTGAACCATGTTCA10.7692307692307693No Hit
GTTGTACATGAATTTTTGACTACATGAAGGTTGAGGAATGGTGGTTGGCA10.7692307692307693No Hit
GTTTTATTATGTTAGGCATTGCACATTTAGAAATGAATGAGACACAGCCC10.7692307692307693No Hit
GCCGTAGCCGCTCCTCCCGCAGCTGTGCCGCCTCCTTGTCCTCCTCCTCA10.7692307692307693No Hit
GGTCACGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCA10.7692307692307693No Hit
GGGTGACAGAGACCCTATCTCAAAAAAAAAAAAAAAAAAAAAGAGGGCAT10.7692307692307693No Hit
GAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAG10.7692307692307693No Hit
GTCTCTGGGTGTGCCTATGGGGAAATTCTGCCCTGGTTCTGGGGCTCAGT10.7692307692307693No Hit
GATTTAAACCCAAGCAGCGTGACTTCAGAGACTGTGCTCTTGACCATTTT10.7692307692307693No Hit
ATTTTGCCACAACTTTTCTTTATGTTACATGAAAATGTTGACTATTAACA10.7692307692307693No Hit
ATTTTTGTGTGTGTTTACAATATTGTGATTGCTGTAATAATCAGGCAGTG10.7692307692307693No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA10.7692307692307693No Hit
TGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAACTGCGTTTA10.7692307692307693No Hit
GCATAGCCATGCCTTTATTTTCTCAGATCTTACTCTGTGAACCATCAGGC10.7692307692307693No Hit
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGCGCTTTTGCCCTTCTGC10.7692307692307693No Hit
ATGAGATACCATCTCATGCCAGTTAGAAGGGCAATCATTAAAAAGTCAGG10.7692307692307693No Hit
GATTTTTAGGGGAATTAATTCTAGGACGATGGGCATGAAACTGTGGTTTG10.7692307692307693No Hit
GCTATGCGCTGTCCGGGCAACCGGGGGTGCTGGTCTATGGGCTGGCGCTG10.7692307692307693No Hit
ACCGCCGTTAAAGCCGCAATCCTGACCTTCCGTGTTCATCAGCACAAAGC10.7692307692307693No Hit
ACATCAAATACATTTCAGAAATACACTGGTTTTGTCCAGAAAGGTGGGAC10.7692307692307693No Hit
TTCTCAGAATCTTCCTTGTGTTGTGTGTATTCAACTCACAGAGTTGAACG10.7692307692307693No Hit
AGATCTCGTATGCCGTCTTCTGCTTGCCCATGTACCTGTCTCTTATACAC10.7692307692307693Illumina Single End Adapter 1 (96% over 26bp)
CTGCAACCCCCGCCTCGCGGGTACAAGCGATTCTGCTGCCTCAGCCTCTG10.7692307692307693No Hit
ACGTGGGTGAGAAAGGTCCTGGTCCGCGCCAGAGCCCAGCGCGCCTCGTC10.7692307692307693No Hit
GGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA10.7692307692307693No Hit
TAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCC10.7692307692307693No Hit
GAAAGTGACAGAAAGAATGGAACCAAGTTGGAAAAAACTCTTAAGGATAT10.7692307692307693No Hit
CTACAGATTCAATGCAATCCCTATCAAAATTCCAATGACATTCTTTACAG10.7692307692307693No Hit
CCTTAATATATTCGCTGGTTTAACTGACGAAGCTCAACATGCTGAAATCA10.7692307692307693No Hit
GCCCACAGCCCTCACAAGTTTCATCTCTACCAGGAATCAGACTAGAGTTA10.7692307692307693No Hit
GGGGAAAAGTGCCAGAAAATCACACAAAGTAATTACCATATCTTAAAATA10.7692307692307693No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT10.7692307692307693No Hit
GATTATAGGCGTGAACCACCATGCCCAGCCATACTTAACATACTTTACGA10.7692307692307693No Hit
CATTTATTAGAGTGCCACTTCACAAATAACTCAGTTACCTGCAAAAATAG10.7692307692307693No Hit
GCCTCCCGAGTTTAAGCAATTCTTGTGCCTCAGCCTCCCGAGAAGCTGGG10.7692307692307693No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTAAAAAAAAA10.7692307692307693No Hit
GAGCCACTGCGCCTGGCCTTAAATCAGGATTTTTGATAAAATTATTAATC10.7692307692307693No Hit
TTCATAATGTTCACAAGCTTCTTTGACTTACAGTGAAAAAAGACTTCTGT10.7692307692307693No Hit
GTGCGGACAGCACCTCGTAGATGGTGCCGGCCCAGCGCGGCATGTAGATC10.7692307692307693No Hit
CTTTTATTTCTTTTTAGAACTATGAATAATCAAAAAGAGTGACCTGAATT10.7692307692307693No Hit
NCCTCTTTGAGTTGATGGTAAGCGTTCCTCTCATCAATGTGGAATAGCTT10.7692307692307693No Hit
TGGTTTTGTTGATTCTTTGTATAATTTGGGGGTCTTAATTTTATTCAATT10.7692307692307693No Hit
GACCAGCCCAGAGAGATCTTTAGAGGCTACAGCTCATCAACCTGCTACCC10.7692307692307693No Hit
CTTCTGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTG10.7692307692307693No Hit
GGCTATAACCCTTTGTTAGAAATAAAGTCTCCTTTCCAAATTTATAAAAT10.7692307692307693No Hit
AGATTGCACTACTGTACTCCAGCCTGGGCGACAGAGCGAGCCTCCATCTC10.7692307692307693No Hit
CCTCGATGCCGGGCAGGTCGCCATCGTCGCCGGCTTCCAGGGCTGGACCG10.7692307692307693No Hit
ACATAAAAATCAATTACAGGTGCACAAAAGACATAAATGTGAAAGGCATA10.7692307692307693No Hit
AGGTATTTGATAACGCCCTCATTATTTCTATCTTTCCTCGTCATTTTGTG10.7692307692307693No Hit
CAATGACCCAAAGTCACATTAGCAGTTATACAGTTGAAATGTCACAACTC10.7692307692307693No Hit
GCTACATCCTGCAACCAGCACCGACATCCCACTGCCATCATCACCATGCC10.7692307692307693No Hit
TGATGCATATAAAACACTTGGCAGGCTTTATAAACCTTAGTTTTAGTACC10.7692307692307693No Hit
CTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGG10.7692307692307693No Hit

[OK]Adapter Content

Adapter graph