FastQCFastQC Report
Tue 10 May 2022
EGAF00003657869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65080
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA2090.32114320835894283No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1280.19668100799016594No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA940.14443761524277812No Hit
GTACATGGGCGCGCCATGTCGCCGCGCGTGTGATGGCTCTTGAGGCCGAC900.13829133374308542No Hit
GTGCGGGGCTCTATGCGCTCGACGCGCGCAACGAGCTCGTGGGCGGACGG800.1229256299938537No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG770.11831591886908421No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT760.11677934849416104No Hit
GTACATGGGCACTGCATCCTGCTGACGCGCGACACCGCCTCGGGCAACTG730.11216963736939152No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA680.10448678549477566No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT670.10295021511985249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)