FastQCFastQC Report
Tue 10 May 2022
EGAF00003657870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65080
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1550.23816840811309156No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1460.22433927473878304No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA980.1505838967424708No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT870.13368162261831593No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT860.13214505224339276No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT850.13060848186846957No Hit
GTACATGGGCGCGCCATGTCGCCGCGCGTGTGATGGCTCTTGAGGCCGAC850.13060848186846957No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA840.1290719114935464No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG780.11985248924400738No Hit
GTACATGGGCACTGCATCCTGCTGACGCGCGACACCGCCTCGGGCAACTG710.10909649661954518No Hit
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC690.10602335586969883No Hit
GTACGTGATCGGCGCCAACCCGAAGGCGGCGCAGCTCAACGGCATCTCGG660.10141364474492932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)