FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003657941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCATTAATCTTCATAGTAACTAATCATGCAGAGTGTGTGCCATTATT32.097902097902098No Hit
AATATTATCCTAGATAGTCTGGATGAACCTGATTCAGTCAGCGAAAAGGT32.097902097902098No Hit
GCATAAGAGAATCTTCAGTATCAGAAACACATCACTACATATGTCATAAT32.097902097902098No Hit
GTAGGAAGACAGCACAACACACTGACCAATGATCATGGAAATGGATGGAG32.097902097902098No Hit
TCTAATCACCTAACTTACAATACAGTATTCCTCCTTCCTTATGTCACGAT21.3986013986013985No Hit
TGGTGGCCTATGCCTGTAATCCCAGCACTTTGGGACACCAAGGCAGGCAG21.3986013986013985No Hit
CATAGTGAATCAATAAATGTGATTCATCACACAAACAGAACTAAAAACAA21.3986013986013985No Hit
GAATCATAAGGGACAGGAGGGAGATCTGCATGCCAGGAGGCAACCGAAGG21.3986013986013985No Hit
AATTAATATAAAGCCTCATATTAAAAGCCTAGTTACTGGCTGGGTGCGGT21.3986013986013985No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC21.3986013986013985Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCA21.3986013986013985No Hit
TCTTTTCCTATATCACTGATCTCTGTGGGTAGAACTTACTCCATCACTTG21.3986013986013985No Hit
GTTGCAAATAGCATGTGTCAGTTACCTAAGGAGAAAAGAGATTCTTATAA21.3986013986013985No Hit
CAGTAGGCCAACAAATAAATATTTAATTCTGATATATCAAACAAGCTACT21.3986013986013985No Hit
CGACCACCCACACCGGTGCCTTTAATGGCGCTGGCGTCGAGATTGTGTTC21.3986013986013985No Hit
CACTAATTCTGGAATGTCAATTCCCCGAGTAAATCCCTCGGTCAATCCTA21.3986013986013985No Hit
GCTTTACTGAGATATGACTAACATGGAATAAACTACACATATTTAAAGTG21.3986013986013985No Hit
TGTTAGTACTGCTACTCATTTATCTGGAGCTCTAAGTCTTACTTATAAAT21.3986013986013985No Hit
CTTAAGGAGTGTCCAGTCTAGATCCCTCACATGTGCAGTTCACAGTAGGG21.3986013986013985No Hit
TTAGAGGCACAGCTAGTACGGTAGCTCAAGTCTCCTGACTCCCAGTCCAG21.3986013986013985No Hit
CATAAACGGTGGCCGGGGTATACTTTGAAAACAACGACAACGACAACAAC21.3986013986013985No Hit
ATATTGCATGTAGTTGTACCAAAATAAAAACGAGCTCTTTCTGGTAATTT10.6993006993006993No Hit
ATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTGG10.6993006993006993No Hit
GGCTGGAGTGCTGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCG10.6993006993006993No Hit
CCACCATCCAGTGCACAAACCAGAAGTAGAGGAGACATCCTTGACTCCTT10.6993006993006993No Hit
ACTCAGGAGGCTGAGGTGGGAGGTTTGAGCCCAGGTGGTCAAGCCTACAG10.6993006993006993No Hit
GGCCCAAGAAGCAAAACTTCTTCCTCTTTACCTTTGGAGGATGAAGCCAT10.6993006993006993No Hit
GTGCCATGCAGAGAAACCACTCACCTGAACCCTTCCTTGATCAGCCAGAT10.6993006993006993No Hit
GAAAGAAATAGTCTCTAATGGCCCGGTTTAGATTGTAGAGATAACATGTA10.6993006993006993No Hit
CCCGGTAGCCGTAGGCCTGGCCCGGCCGCGCCTCGGGCAGGTAGCAGTGC10.6993006993006993No Hit
ATTAAAGACTTAAAGGTAAGACTCAAAACTATAAAGCCACTGGAAGAAAA10.6993006993006993No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.6993006993006993No Hit
GCCCCAGATTTGACGTGCAACTCAAAGACCTGGAAAAATGGCAGAATAAT10.6993006993006993No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGATTTGAGGATTTCGTTGGAAACGGGATTACATATAAAAAGCAGTCAGC10.6993006993006993No Hit
TTCTTAAAGAGATTCTACCTAGTTACGCCTTCAAATTTTTATTTGTTGAG10.6993006993006993No Hit
GTGGGATCTACTGCTGCCGGATCCAAATCCCAGGCATAATGAATGATGAA10.6993006993006993No Hit
GACCTATGACACAGTCCTCTCCTATGTAATGGTAATTTCATGTTGGGAAA10.6993006993006993No Hit
CTCTTGGGCTCAAGCAGTCCTCCTGCTTTGGCCTCCCAGATTGCTGGTAT10.6993006993006993No Hit
GGATGGTCTCGATCTCTTGACTGCGTGATCTGCCTGTCTCGGCCTCCCCA10.6993006993006993No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTT10.6993006993006993No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
AAATGACAGAAATGCTTTAGCCACTATAAGTCTTTCACATATTTCTAATG10.6993006993006993No Hit
TCTACATAGTGTACTAAGAGTTGGCTTAAATGTAATTGATATAAGAAAAA10.6993006993006993No Hit
GTCCCGCCGAAGCAGCCCTGCTTCTCGTGACCCACAACCTGCTGCACCAC10.6993006993006993No Hit
CCCAGCGACAGGTCCTGTACCTCGAAGGAGAACGCCTCGCCCTGGGGCAG10.6993006993006993No Hit
CTTCAATAGACTCCCTTACAGTCTGCTTTTTAACAGAAAAACCAGAAAGA10.6993006993006993No Hit
GTAAATCGGCACTATCTTGGGAAAATGTCCATGACTTGGCAATACTCATC10.6993006993006993No Hit
CAAAAAATATCAAAGTACCCAAAGAATGTATTATATACTGTACATAAAAT10.6993006993006993No Hit
CAGCAGAAGCAAGGCGGCTCCGGGCAGGCTTCCGGACATCGCCGAGAGCT10.6993006993006993No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTT10.6993006993006993No Hit
ACCTGGCACTGTCCCCGGAGCGGGTCGCGGCCGGCCGGGCCGGGGCCGGG10.6993006993006993No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGTGACAGAGCAAGACACTGAAAAAAAAAAAGAAAGAAAGGAAAGAGAG10.6993006993006993No Hit
CTTCCCAAGTACTCTGCGTTGATACCACTGCTTCCCAAGTACTCTGCGTT10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GGAAATATCTTCTCCTAAAAACGACATAGAAGCATTCTCAGAAACTGCTC10.6993006993006993No Hit
GTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT10.6993006993006993No Hit
GAATTGAAGGTGAGTTATTGTTTAATGGGTTTAAAGTTTCAGTTTTACAA10.6993006993006993No Hit
GGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGG10.6993006993006993No Hit
CAAGCGTCTTGGATGAAATTTTGATGAGTAAACAATCATCTGATAAATAA10.6993006993006993No Hit
GTGAATGGATTAGGGGCTTAGTTACATCTGCAAAATCCATTCAACTTATT10.6993006993006993No Hit
CTTAAATAAAGGTCACTCTTAATGCCTATCCCAGCATAGATGCAGCACCA10.6993006993006993No Hit
CCTCGGTGAAGTCGTAGGCGCCCAGCAGTGCCGCGCGCGTCTCGCCGCCC10.6993006993006993No Hit
TCTGAATCCTTCCAGTTCTTCTTAGGCCACTTAAACGCCACCGTCTCCAC10.6993006993006993No Hit
CCACAAAGATGGGGAAATAACAGAGCAGAAAAACTGGAAACTCTAAAAAT10.6993006993006993No Hit
CTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAA10.6993006993006993No Hit
GTTTATATCCTATCCCCAAATTTTTTAGAGCTGAAGTGAGTAAAATAGAT10.6993006993006993No Hit
AAGAATTTTTGTTTGGTTTTGCTTTGTAATGGGATCATTGAAAATGAAGC10.6993006993006993No Hit
GATGTGCGGGACATCCTCACCCCAATTCAGATTGAAGCTGCTTACCACCT10.6993006993006993No Hit
GGAGAATGGGACCTAGAACACAAGCGGAGAGTTCAAGGAGTATAGACATA10.6993006993006993No Hit
CCAGAATGTAAGTCCTTTTCAGTGCTAGTTCAACCCTCTTACCAGGGCTC10.6993006993006993No Hit
GGGTGACAGAGCAAGACACTGAAAAAAAAAGAGAAAGAAAGGAAAGAGAG10.6993006993006993No Hit
AACTATAATAGAAAACTCAGGTTGTACTTATATACAAACATTTGGCCCTT10.6993006993006993No Hit
ATCCTCGGGCGCATCGTCGACTGGCTCGCGGGCCAGGAGCCCTCGCGCCT10.6993006993006993No Hit
GCGGCAGCTTCACCTCCTTCGCAACCACGCGCTGCATGTCCTGCACGGCC10.6993006993006993No Hit
GAATTTTTGTCCTTTTGTTTCAGGCTTATTTGACTTAGCATAATGTTTTC10.6993006993006993No Hit
GTATGTGGAAATAGATATTTGGAGCGCTTTGAGGCCTATGGTGAAGAAGG10.6993006993006993No Hit
GTTAGTCTGATGGGCTTCCCTTTGTGGGTACTCCGACCTTTCTCTCTGGC10.6993006993006993No Hit
ACATAGGGAGACCCTGTCTCTACAAAAAATTTAAAAATTATCTGGGTATT10.6993006993006993No Hit
TCTCAGCTCACTGCAACTTCAACCTCCTGGGTTCAAACGATTCTCCTGAC10.6993006993006993No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGAA10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATTTGTAAGTCTCCCAGAACTCCAGTCAGACCAGAAATTCCACAGGCCCA10.6993006993006993No Hit
GTCTGTGGTACTTTGTTATGGCAGTCCTAGCACACTGATACGTGATCACA10.6993006993006993No Hit
GTGAAAGGTGGTACTAAGGAAAAGCGATTAGCAGCTCAATTTATTCCGAA10.6993006993006993No Hit
GTACAATTCTTCGTGACATGTCTTGCCTTACCGTGCTCCAAAATACAACC10.6993006993006993No Hit
GTGTTATTGGAGTATAAGGACAGGAACAGACTGAGGAACGAGTAGGAACT10.6993006993006993No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
ATTGTAGCCATGTCAGACAGAATTGCAGGTAGTTTGGGGACCCTGCTTGT10.6993006993006993No Hit
ATTTTTTAATTTCTGGAAATTTTTTAGTAGCTGTTTTATGATGTTCATGA10.6993006993006993No Hit
CCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAA10.6993006993006993No Hit
GTGATCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC10.6993006993006993No Hit
CCGAAGAAATGCTCGCGGGTATATGCGCCGCCGAAGGCCTTGCAGTTCTG10.6993006993006993No Hit
GATTACAGGCGTGAGCCACCGCATCCAGCCACTCAATTTTTAAATAGATG10.6993006993006993No Hit
TTATTGAAGGATTTGAAGCACTTTTAAAATAAGAAGCATGAATAACATTT10.6993006993006993No Hit
CCTGGGCGACAGAGCAAGACTGTGTCTCAAAAAGAAAAAAATTTGTTCAA10.6993006993006993No Hit
ATCTATTTTTTGACCTTTTAAAAAAACCAGCTCCTGGATTCATTGATTTT10.6993006993006993No Hit
CTCCTGAGTAGCTGGGACTACAGGCACATGCCACCATGCCAGGCTGATTT10.6993006993006993No Hit
GCTGAGATTACAGGCACCCGCCACCACGTCCGGCTAATTTTTGTATTTTT10.6993006993006993No Hit
GTTCAGCTCTAGAGCATGCTTAATATGTCATAGCGTATTGAAATGTTGTG10.6993006993006993No Hit
GATTCCATTTGATTCCATTTGATGTTGATTCCATTCGATTCCATTTTATG10.6993006993006993No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
ACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCCGGCCGGGCGCGCCCCGG10.6993006993006993No Hit
CGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGA10.6993006993006993No Hit
ACTACTAAGGTTGGCAATCATGTTCTTTTTTGAAACATTGAACAACATAT10.6993006993006993No Hit
GCCCACTCTTACCACTCTTATTCAACATAGTACTTGAAGTCCTAGCAGAA10.6993006993006993No Hit
GGAAGTGGACATTTGCAGCGCTTTGAGGCCTATGATGAAAAAGGAAATAT10.6993006993006993No Hit
GACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCAAA10.6993006993006993No Hit
GTCTTGGAACCCGATTAGGTTTGTGTTCTCGACAGCGAACCTCAAGTCTC10.6993006993006993No Hit
TCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTT10.6993006993006993No Hit
ATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCG10.6993006993006993No Hit
AGCATATCCATACAATGAAATGCTATTGCGCAATGAAAAGGAATGAGCTT10.6993006993006993No Hit
GTGGTGTGCAGTGTAACCTGGAGGATGTGTTTCAAGAGTGTGAACTCAGA10.6993006993006993No Hit
GGAAAAGAAAGGAGGAAGGAAAGAAAGAAGGAAAGAAAAGAAAAAGAAAG10.6993006993006993No Hit
ACATTGGAAGCAGTGGTATCAACGCAGAGTACATTGGAAGCAGTGGTATC10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACT10.6993006993006993No Hit
CCCTTCTTTCCTCCCCCTTTCCTCTTTTTATTTTTTTCTCCCAAGACTGC10.6993006993006993No Hit
GTGCGACGTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCTATTCT10.6993006993006993No Hit
GCGTTGATACCACTGCTGTATCAACTCATAGTACTTTTTTTTTGTTTTTT10.6993006993006993No Hit

[OK]Adapter Content

Adapter graph