FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003657942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTATAGAGGTGCAGACAATATCTTGCTGTCCTGGTGAAGGTGGGATTG32.097902097902098No Hit
TCCATTAACTCCTCAACTTACTATAGTAGAACTTCTACCCTCTACGTTTC32.097902097902098No Hit
ACCTTCTCAGAAGAAAAACTTTTGTTGGCTTCTAAAAACCACTGGACTAG32.097902097902098No Hit
GTTTTTTCCTGTTGTGAACTAGCGCTTTTGTGACTCTCTCAACGTGCAGT21.3986013986013985No Hit
CCATATTAAAAACTGTACTCCTTAGATCCCTTCCCTATTTATTTTTTTCC21.3986013986013985No Hit
GCCAGCTAATGTGTCACATCAGTTGTCAATCATGTTAACAGATCTCAAGT21.3986013986013985No Hit
AAGTGATTCTCAGTTCCTTGGTTGTACCTGAATTTACTCCTTGTGTGATT21.3986013986013985No Hit
GATATATTTTAAGACTGGCAATGTCTCTAAAATCTATTCCCTGTGAACAC21.3986013986013985No Hit
GTAACAATTACTTTCTAATTCCCTTCACCCTTCTCTTCCTCATGTCCCAG21.3986013986013985No Hit
CATGTATACATATGTAACAAATGTGCACGTTGTGCACATGTACCCTAGAA21.3986013986013985No Hit
AACCTCCACCTCCCGGATTCAAGCAGTTCTCCTGCCTCAGCCTTCTGAGC21.3986013986013985No Hit
AGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTG21.3986013986013985No Hit
TCTTGGGACTGACCAATTCCCAAGCGTTTTCTCTCTGAAAAAAGTTAAAT21.3986013986013985No Hit
AGCCAAGAGACACAAACAGGAGGCGATAACAAAAGCCACAGTAGAGCTGA21.3986013986013985No Hit
GTTTTGAACTCCTGGTGTCAGTGATCCGCCCACCTCAGCCTCTCAAAGTG21.3986013986013985No Hit
CTCCAGAGTAGCTGGGATCACAGGCACATGCCACCACGACCGGCTCATTT21.3986013986013985No Hit
CTTTTATTACAATTCTTACACTTATTTCTCTGAATAGCATTACTTCATCA21.3986013986013985No Hit
CTTCCTATTTGGATGCCTTTTATTTCTTTCTCTTGCCTGATTGCTCTGAC21.3986013986013985No Hit
CGTCGAATAAATAAAGGATACACAATGAGTAGCGTAGATATTCTGGTCCC21.3986013986013985No Hit
ACTGCTCTGTGAACTGGCCTGTCCTTGGTTTAAGGCAACATTGGCTACAA21.3986013986013985No Hit
GAAATTGGCTGGGCATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGA10.6993006993006993No Hit
GATGAGTGGATTGGCACATATACACCATGGGATGCTGTGAATATTGTTCA10.6993006993006993No Hit
ATATTTATTTTCATTGCAGTATGCCTCTTCATTTTTGGATAGGAAATAAA10.6993006993006993No Hit
CTCTGTCGCCCAAGTTGGAGTGCAGTGGCACAATCCCGGCTCACCGCAAC10.6993006993006993No Hit
CATGTATGCACATTTTCCCATAAATATGGTAAATTTTAATTTTTTATTGA10.6993006993006993No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG10.6993006993006993No Hit
AAAATACCAGGTGCATTTGGAATCATCCCAGTGGGGAGCTTGTTACTGGA10.6993006993006993No Hit
AATTTATTTAGGTTTTCTTTGTTGGTGGTGGTATTCTTAGACAGGGTCTT10.6993006993006993No Hit
NTCTGTCGCCCAAGTTGGAGTGCAGTGGCACAATCCCGGCTCACCGCAAC10.6993006993006993No Hit
TATAAAAATGAGAACATAAATTTGCACTAAAGTTTCACTATTGCTATTCC10.6993006993006993No Hit
GCTTTAACTGGATCATATAACTCAAGTCTCAGAGCAGCTTGCAGGTCATC10.6993006993006993No Hit
ATGTTATGGATCTCTCTGCGTTTGAATAAAGACTATCTCTGTTGCTCAAA10.6993006993006993No Hit
CGGTTCGGCATGAACATCGCCGACGTGCAATCGGTCATCGCCTCGGCGGT10.6993006993006993No Hit
GGATAGACATTTGTATCCTCAAAAGAAGAAGTTAGAAGAAAGGACTGACA10.6993006993006993No Hit
TTCTTACATGCAAATATATCAATGTTCCTTTACATTTATCTCACACATCT10.6993006993006993No Hit
GCCTGCATTATCGCATTTGACCGAGACATCGGATTTCATTAATTCAAGCT10.6993006993006993No Hit
CTCTGCGTTTGAATAAAGACTATCTCTGTTGCTCAAAAAAAAAAAAAAAA10.6993006993006993No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GTCCGACCGCAAGGTGTGGTGCTTCATCGGCGACGGCGAGAGCGACGAGC10.6993006993006993No Hit
TCTGTATTCAATTCAGGATTTAGTTCTTTCAGGATTTTCACAGCTACTTT10.6993006993006993No Hit
GAGTACATGAGGGAGGGAAATGTAGGAGAGGAAGTAAAAAAAAATATATA10.6993006993006993No Hit
GATTCTTCAGTTGAACAAATGGGGTCTTTACATTTGGCAAGGTATCCTAA10.6993006993006993No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
ACCAGTCCTAGCAAAGACAGCAGGGCCATCGGACCACACAACACGGCGAG10.6993006993006993No Hit
GAGACTCAACCATAAGAAAAATAATAATTTAGAGAAAATCAGTGTCATAT10.6993006993006993No Hit
GGCATGGAAGCTGGCATTCTTTTACGGAGGAAAGAGGTGATAAACAAACA10.6993006993006993No Hit
GTCCTGATGTATTTGATTGACCTTAGTTTTATAGGTCACAGATATTAACT10.6993006993006993No Hit
AGTACACATATCGCAAACAAGATTCCGAGAATGCTTTCGTCTAGTTTTTT10.6993006993006993No Hit
GTTCGGGAGTTCGAGACCAGCCTGACCAACACGGAGAAACCCCATCTCTC10.6993006993006993No Hit
GGCCAAAAGAAAGTAAAGTGCTTCACTCCCAAAAAGCCATCCAGCTAGGA10.6993006993006993No Hit
CTGCGTTCCTTCCTTCCTTCCTCTTTCCTTCTTCTTTCCTTTTCCCTTCC10.6993006993006993No Hit
ACTCTAATGAACAAGTCTGCTCACTGTTCTTTCTCCAATGGGAGAAGCTT10.6993006993006993No Hit
GCTTAAGCAGCTGTCTTGTAATCATTGAGTGATAAGTACAGGATAAAAGC10.6993006993006993No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT10.6993006993006993No Hit
CTACGATTCAATTCAATTCTGACACTAACTACCCGGAGTGAGAGTCAGCT10.6993006993006993No Hit
TTCTTATAATATTCAATTTTCACCCTCAATAGAGTGTTTTGATTATGTAA10.6993006993006993No Hit
GACTACCACCACGTCCCGCCGGGTCAGCAGCGAGTTCGTCGCCGAGTGCC10.6993006993006993No Hit
CTACAAAAAGAGTGTTTCAAACCTGCTCTGTGAAAGGGAATGTTCAATTC10.6993006993006993No Hit
CAGGGTGCAGAGACAGTTACATATTTGTTGATATGGCCTCAGTTGGAAAT10.6993006993006993No Hit
GTTTTCAGTTCAACAAATAATCCGTGGTGCACTGGCCTGGGCACTGCAGG10.6993006993006993No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GCAGAAGAAAGAAAAAGACATAATGAAAAAAAACAATAAACTTTGCAAGG10.6993006993006993No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GGTCATATTCCGTGTGTGCACACATGCTATTTTTTCTATGGTAAGAAAAT10.6993006993006993No Hit
CTCCCAGCATGCCGAGAAGGTCGAGCTGTGCCTCTTCGACGACCGCGGCC10.6993006993006993No Hit
GTCTTTTTGTAGAATCTGTAAGTGGATACGTGGACCTCTTTGAAGATTTC10.6993006993006993No Hit
CAGCAAGTTGAGGGAGGAGCCCAAGTCTCCCAGTGCTGTTCCGATGCCTT10.6993006993006993No Hit
TGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGAC10.6993006993006993No Hit
ACATGGGGCAGTCTCATTCCTGCAGAACCTGGAGGGGTTTGAGGAATAAT10.6993006993006993No Hit
GTAACATACCATCAAAATATCTCAAGCAAAAACTGACAGAATTCAAACAT10.6993006993006993No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA10.6993006993006993No Hit
GGATACAGCTGGAGGTCATTATCCTAAGCTAAGTAACACAGGAACAGAAA10.6993006993006993No Hit
GTGACAGAGGAGACCCTGTCTCTTTATTTAAAAAAAAAAAAAAGTCATTT10.6993006993006993No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCCGTAAGTAGGAGAGTGATAT10.6993006993006993No Hit
ATATAATCCTCCTTGCAGAGATCTTTTATCTCTTTGTTTAGCTTTATTCC10.6993006993006993No Hit
GTGGCCCACGAGGCCTCAAATATTGCCTCTGGCCCTTCACAGAACACGTG10.6993006993006993No Hit
GTGACAGAGGAGACCCTGTCTCTTTATTTAAAAAAAAAAAAATGTCCTTT10.6993006993006993No Hit
AATCATCATCGAATGGAATCGAATGGAATCATCGAATGGACTCGAATGGA10.6993006993006993No Hit
GTGAAAAGACCAAATCTACGTTTGATTGTTGTACCTGAAAGTGATGGGGA10.6993006993006993No Hit
ACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAT10.6993006993006993No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.6993006993006993Clontech SMART CDS Primer II A (96% over 26bp)
GTACACGCCCATGGCCACCAGCACGTCGGCCAGCACGAAGATGGTGTCGC10.6993006993006993No Hit
CTTTGATATTTTATGTACACTATAGAATATATATCTGGTGTACTTTGATA10.6993006993006993No Hit
CCTGTGACCTTGAAAAGCCAGTCTGAAGAACAGACTGACATGGAAAATGA10.6993006993006993No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
CTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTC10.6993006993006993No Hit
CTTTTAATTCTTCTGCCTTTATCACTTCAATATAATACAATTTTTATAAA10.6993006993006993No Hit
CTACAGTGTGCCTTATACATGTATATGTACTGAAGTATGAGTTCAGTGAC10.6993006993006993No Hit
GGATCCAAACCACCCAACACAGAACAGCAATAAGGGGAATACTAGAAAAG10.6993006993006993No Hit
TATATCATGTGTATTAGCAGCACAGTTCAGAGATCCACGATAGCATTCAG10.6993006993006993No Hit
CCGGAGCGCTTCGCGGCCTTCATCCAGAGCGAGATCGCGAAGTACGCCGA10.6993006993006993No Hit
GGCTGGTCTCGAATTCCTGACCTCATGATCCACCGGCCTCAGCCTCCCAA10.6993006993006993No Hit
CTTTGGGAGGCTGAGGCAGGCGGATCATGAGGTCAGGACACCATTCTCTG10.6993006993006993No Hit
GTCATTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGT10.6993006993006993No Hit
GGCTGCGAGCCCGCTCACGGGCGCGGGGGAGGCGACGGTCACCGCGACCG10.6993006993006993No Hit
GTGACAGAGGAGACCCTGTCTCTTTATTTAAAAAAAAAAAAAAGTCCTTT10.6993006993006993No Hit
TGATTATGGCTCACTGTGAGCACTAAAAACAACCTACAAGGCCCAAGTGA10.6993006993006993No Hit
CCTGGTGACGCAGCTGCTCGACGTGGACACCCGCGCCCGCGTCTTCACCT10.6993006993006993No Hit
ATCCTATCAACCTCAGTCCTGTAATTAGTGAGTTATTCCCACCAGGTAAT10.6993006993006993No Hit
GTAGAAAGAAAGGTTCATCTCTGTTAGTTGAATACACACATCACAAACAA10.6993006993006993No Hit
AAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GCCTCTAAGGAAAAAATGTCTTCTTCCTCTTCATAAGGCTCATTCCATCA10.6993006993006993No Hit
TTATTGCGGATGCTTGTATTATCATGGAAAGTTATATTCTACTAAAAGGA10.6993006993006993No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6993006993006993Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAAAGCAGTGGTA10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACTTTATAGAGTTTTGGGTAAATTTCACTGTGATTCAATTTTAGAACATT10.6993006993006993No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6993006993006993Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTTAAACATGTGTCACTGGGCAGGCGGTGCCTCTAATACTGGTGATGCTA10.6993006993006993No Hit
GACTACTGGTAAATAACAAAATGAAGGCAGAAATAAAGATGTTCCTTGAA10.6993006993006993No Hit
GCGTGCACCACTACGCCTGCCCAGAAGCTTTTTAGTTTTAGTTCCATTGT10.6993006993006993No Hit
GGGTAAGAGAGCCAGACCTAGGGGGAAAAAAAAAATCATGTTTAGGCCTA10.6993006993006993No Hit
GTCCATGATGCCAGCTGAGGTTGTCAGTACAATGAAACCAAACTGGCGGG10.6993006993006993No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGATA10.6993006993006993No Hit
AAGTAGTTTCAAATACCCTCTCCAAACGGAACTGGGGTCATCCATTAGAC10.6993006993006993No Hit
GTCGGGGATTCTGTCCCCATATCAAAGCAGATCAAGATCAAGTTCATTTC10.6993006993006993No Hit
TAGTATATCTGCCACTCGAGGAAGATTTTCTCCAGTGGCAAATTGAGGCA10.6993006993006993No Hit
ACCCAGCCCTTAGAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGC10.6993006993006993No Hit
ACCTAATATATTGCCTTTCTGCAAGATTGTGACAGGGAACAAGACGTGAC10.6993006993006993No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTG10.6993006993006993No Hit
GGGTTATTTCTTCCAAATGTATTTTTCTCATAGGAAGAGAAAACTGGCCA10.6993006993006993No Hit

[OK]Adapter Content

Adapter graph