FastQCFastQC Report
Tue 10 May 2022
EGAF00003657959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70312
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC1470.2090681533735351No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC1400.19911252702241436No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT1120.15929002161793152No Hit
CAATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAA1100.15644555694618273No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1090.15502332461030835No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA1050.14933439526681078No Hit
GTATCGGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCAT970.1379565365798157No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA940.1336898395721925No Hit
GCAATATGCACTGCCGCGTCTGACGGGACAAGGGATCAACCTTTCCCGGC900.12800091022869498No Hit
TGCCAGATGCGATCGAGCGCGCTCTGCAGTTCGGCGAAGACCGTGGTTGC860.1223119808851974No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC850.12088974854932302No Hit
AGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCT850.12088974854932302No Hit
GTTCCGTGGCAGCGAGCAAGGCACAAGCTGCCACCCAGGAAACAGCGCGC800.11377858686995107No Hit
TAGTAGACCCAGGCCAGCAGGACGACGAGCGAACCTGCCGCCGCAAACGA790.11235635453407669No Hit
ATCCATCACCGTGGCTTTCGAGGATGGCACCCAGCGTTGCATCCACCCGG770.1095118898623279No Hit
GTCTACGCCCATGCGCACGGTTCCGTGGCAGCGAGCAAGGCACAAGCTGC760.10808965752645353No Hit
ACATATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGA750.10666742519057912No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT740.10524519285470474No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740.10524519285470474No Hit
ATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTGGCAGGACCATT720.10240072818295597No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA720.10240072818295597No Hit
ATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAACTTCA710.10097849584708159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)