FastQCFastQC Report
Wed 8 May 2024
EGAF00003657983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003657983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences270688
Total Bases27 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG3580.1322555857666391No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT3070.11341470623005083No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA2780.10270126492493202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)