FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGTGCGTGACTCATACGCCCCATCTTGCCCGATAAACTGCCAAACGT39.67741935483871No Hit
CCGCTATGTTGCGGCGCTGACACGGTCGGGTGTGATGCCGGACGAAAGCC26.451612903225806No Hit
GAAAGCTGGCGGCCTCAGTGGCGGTGATCGCCATCTGGGCGCCGACGCCG26.451612903225806No Hit
ATCCGAGGGCCCCTCGGTTCCTCATCCCTTGGCGGCTGTCCGGCCTCTTG26.451612903225806No Hit
CATTGGCGCTTTCGGTGCTTCTTTCGGCGGCTCTGCCACCGGAGCTTTCG13.225806451612903No Hit
CGTCGGCGAGGTGCCGGAATATGCCGTCGTGGTACCGGGCGCGCTGCCGG13.225806451612903No Hit
GGCCCGCACCAAGCCGGAAGTGACCGCTTCGGTGCTAGTCGCCTCACACA13.225806451612903No Hit
GGACACGAAGGTCGGCAAATCCTTCTTGGAAGGCGTCAACGGCGTTCATG13.225806451612903No Hit
GCCCCGAGGCCGGGTCAGGTGCGGGGTCCTTACCTTCTCCGTGTTCAGGG13.225806451612903No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCCACGCAATGATCGCGTATG13.225806451612903No Hit
GCCCTGTCTGAGCAGAGAAAGTAAGCTTTGTAACTCCCAGAGGGGGGCCA13.225806451612903No Hit
GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAG13.225806451612903No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCCACGCAATGATCTCGTATG13.225806451612903No Hit
CGACGCGCTCCATCGCCCGCAATGCGCGCAGGCACAGGTCGAGCAGGCCG13.225806451612903No Hit
GGTATGCACGCCACCCAGAGAGTCGGCTGCTTCGACGATGCGCACATCCA13.225806451612903No Hit
ATGCGAGAGGGCGAACCGTCGGTACGCCGCTGCAGCGGCGCCAAGATCGT13.225806451612903No Hit
GTTGAGCGCGCTGAACGCGGTCGCCGGCATCGTCTTCACACAATCCGGCA13.225806451612903No Hit
GCCGCAGGATTTTCGCGCCGGGATCGCCCAGGGGATTTTCGCCAAGCATG13.225806451612903No Hit
TAGCTGGGCGATCTGTTGATAGGTATGGCGAGATCGGCGTAGCTGGATCA13.225806451612903No Hit
CACTGGGTTCTACCCTGGAACTGGGCTAGCTCTGGAACTTCTAGAGTCCC13.225806451612903No Hit
TCATTACATATCGTATCTTGCAGTTGCGCTGGTTCTTAAATCTGTAAATT13.225806451612903No Hit
CCTCAAGGAAGTGGGCTACAGCGACGAACAGATCGCCGCGCTCGCGACAC13.225806451612903No Hit
CGCCGTTCCGATGATGGATCGACGATTGCCTGCTTCACGAACTTCTCTCC13.225806451612903No Hit
AGGCCTATCTGCGCGAAGAATCCGCCGCCGCGCGCGATTCCATCGCCCAG13.225806451612903No Hit
TGCATGTGCAGGATGCCGACCGGTTTCGCGCCGTCGGTGACGATCAGGGT13.225806451612903No Hit
GGGGTATCGACCTCGCCGTCGGGGCACTGGTCGAGCGGCTGCAGTCCGTC13.225806451612903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)