FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG54.545454545454546Clontech Universal Primer Mix Long (96% over 26bp)
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT43.6363636363636362Clontech Universal Primer Mix Long (96% over 26bp)
AACGCAGAGTACATGGGTAAATATCATAACATGGCCTTACATGTCTGCTG32.727272727272727No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC32.727272727272727No Hit
CAGCAGCTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACA32.727272727272727No Hit
GTGTTCTACAGTGGAGGGAATCAATGATAGTGTCTCTGCCGAATGCTACC21.8181818181818181No Hit
GGATGTTGCTGCCTTCTATAAACTGAATCAATTCAATAAGCAAGTTTAGT21.8181818181818181No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTCGTTGCCCCTCAGCCCCTG21.8181818181818181No Hit
ATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATC21.8181818181818181No Hit
GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT21.8181818181818181No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.8181818181818181Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA21.8181818181818181No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT21.8181818181818181No Hit
GCATCTTGGCGAGATGCCATCCCCCAAGGTGCGAAGAATTACCCTCTCAC21.8181818181818181No Hit
GGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCT21.8181818181818181No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA21.8181818181818181No Hit
TTGCAGGAGAGATGTGATTACCAGTTATGGCAGTAAATCTGAGCACCTTT10.9090909090909091No Hit
CTGTAATCAGTGTATGCCTGAACAGAGAAAGAAGCAAAAGATTCAGATTT10.9090909090909091No Hit
GCTTTTTTTTTTTTTTAAGACAGAATCTCACTCTGTTGCCCGGGCTGTGG10.9090909090909091No Hit
TGTCCGGGTCGATCGTGCACGGCGCGGCCACCTCGCTGCGCCGCCACACC10.9090909090909091No Hit
GAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCC10.9090909090909091No Hit
GGCCATGCGCAGCAGTTGCACCCGGTCCTCGGCCGCCAGGGCGCCCTCTG10.9090909090909091No Hit
CCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTC10.9090909090909091No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.9090909090909091Clontech Universal Primer Mix Long (100% over 23bp)
TGGCTACCTGGCGCGTCGCAGGATCCGGCTGTGGCACCGGGGGGCCATGG10.9090909090909091No Hit
GGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACTGTCTCTTATA10.9090909090909091No Hit
CCCCTAACTGCAATTCAAGACTGCTGTACTTCACTTTCTCCATTTGAGAT10.9090909090909091No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG10.9090909090909091No Hit
GGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTG10.9090909090909091No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
GGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGA10.9090909090909091No Hit
CTTTTAGGGTATCCTTAATCATGTTTTTCTCCACTCCCCGACCCAGACAA10.9090909090909091No Hit
TCATCCAGGGAATGGAATGCGAGGGCTGGGGCCAGGGGTTGGCCACAGCA10.9090909090909091No Hit
GGTGGGGACCGAGATCGCTGTCGTCGACGGCGACGGCAAGCCGGTCGAGA10.9090909090909091No Hit
ATCAAGGAGGGCTCGTTCGCGGGTCTTCCCGGCTCCATCAGCGAGATCAA10.9090909090909091No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTA10.9090909090909091No Hit
GGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC10.9090909090909091No Hit
GCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCA10.9090909090909091No Hit
CCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCT10.9090909090909091No Hit
ATTTGAAGCACACCGTTTTTCTTTCTTCTTTCACGGTATCGACTTCTATG10.9090909090909091No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
AATCGGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACT10.9090909090909091No Hit
CCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAG10.9090909090909091No Hit
TCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCA10.9090909090909091No Hit
GTTCAGGGTCGACTGCCGCTTGCTCCAGTTGGTGGGAAGGATGAACAGCA10.9090909090909091No Hit
GCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTG10.9090909090909091No Hit
GTCTGGAAAGTCTGGAAACCACCTGTAGGCCCTGGCTTTGTCATTTATTG10.9090909090909091No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACA10.9090909090909091No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAGCAGTGGTATC10.9090909090909091Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAAT10.9090909090909091No Hit
GAAATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCG10.9090909090909091No Hit
GTCCAATAGAGCAACCATGCCATCTGGATTCATGTTTTCACCAATAAAGA10.9090909090909091No Hit
ATACGAAAGGAAATCTTCCTTGTTTTCTCATCAAAGGAATGCACTAGGAT10.9090909090909091No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG10.9090909090909091No Hit
GGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCC10.9090909090909091No Hit
GGATAGAAACCACTCACAGAACAGACCAGGAGGTTATGGTGCTGCAGGGG10.9090909090909091No Hit
AGAAAAGCCAATTCTACCAGGCTTGAAATATGGATTCGAAGATGTCTTTT10.9090909090909091No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT10.9090909090909091No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA10.9090909090909091No Hit
GCTTTTTTTATTTTTTAAGACAGAATCTCACTATGTTGCCCACGCGGGGG10.9090909090909091No Hit
CAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACC10.9090909090909091No Hit
CTTCCTTCCCCAAAGCCAGAAGATGCACAAGGAGGAACATGAGGTGGCTG10.9090909090909091No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
TCTCTAGGTTGCCTGTTCACTTTCATGACAGTTTCTTTTGCTGAGCAGAC10.9090909090909091No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCAC10.9090909090909091No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGA10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
CTTTCATGATAAAAATATTCAATAAACCAGGAATACAAGGGAATGCCCTC10.9090909090909091No Hit
GTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTG10.9090909090909091No Hit
TGAATGTGCAGATGATACACAGATTGTGCACCCAGCTTCCCATCGTTGAT10.9090909090909091No Hit
CATGAAGACAAGGTCTTCGGTGACCGCATTGCCCGAGGCGCCCGGCGCGT10.9090909090909091No Hit
GGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAGTACTATGCGTTGAAA10.9090909090909091No Hit
GACTTCCTGGCCTCCAGTGACAAGATCCCAGAGATGGGGAAGGCATTGAA10.9090909090909091No Hit
CTGGAGAACATTTGAAAACATTCTACCTTCAAATTAAATATGAATCCAGA10.9090909090909091No Hit
GCACTCCAGCCTGGGTGACAGAGCCAGACTCAGTCTAAAATAAAAATTTT10.9090909090909091No Hit
GTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTCC10.9090909090909091No Hit
GGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAGTACTCTGCGTTGATA10.9090909090909091No Hit
ATCACGGCCTGAACCAGCCTCAGGTTAAATTTTAACAGTGCCCTGGATGA10.9090909090909091No Hit
AAGGTATACTTTAGGGAATATAGTGAATATAAAATTTAGGATCACAATAT10.9090909090909091No Hit
CCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAAC10.9090909090909091No Hit
CCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA10.9090909090909091No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.9090909090909091Clontech Universal Primer Mix Long (96% over 26bp)
CAATATTTCTGTGTCTTCTGAATTCCTTTTGTCTCCTCATAAGACATTAA10.9090909090909091No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTA10.9090909090909091No Hit
CAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTG10.9090909090909091No Hit
ACCACCAGGAGTGGAGCCTGTGGCTTAATTTGACCCAACACGGGAAACCT10.9090909090909091No Hit

[FAIL]Adapter Content

Adapter graph