FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTAGTATAGGAGACCCTGGAATTAACATGATGTTAGAACTGGATTCAA31.7045454545454544No Hit
TGTCCAATGTGAACAATCACAATTAGTTTATACCGTGGAATCATCAAGTC31.7045454545454544No Hit
CAAGCAATCCGCTCACCTCAGCCTCCCAAAGTGCTAGGATTACAGGCGTG31.7045454545454544No Hit
GTTCTATTCTCTTCTGGACCTGGTGGTTTAAAAGGGCATTTGAACATAAC31.7045454545454544No Hit
CTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTC31.7045454545454544No Hit
CAGGGATGCATGTCACTATACGTTTGTCAAAACCCACTGAACATACACCA31.7045454545454544No Hit
GAATAACTTAATCACAAACTAGGCACACACTCCTGAAAATCTAAAGTGAT31.7045454545454544No Hit
GGGTCGGCCTCCTGAAATGACAGCAGGGAGACTTGGGTGACCCCCCTTCC31.7045454545454544No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT21.1363636363636365No Hit
GTACAGGTTTGGGGCTGGGGAACGGAGCACTAGTCTAAGAGAAAAGCCAA21.1363636363636365No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT21.1363636363636365No Hit
TTCATTATCCAGGTAATAAGCATAACACCCAATAAGAAATTTTTCAATTC21.1363636363636365No Hit
GCGGCGGCCTCTTTTGCAGCTTTTCTCTCTTGCAACATCCTCTGCCTCTG21.1363636363636365No Hit
GGATGTTAAACTTTATTGAAAGATTTTTCTGCATCTATTGAGATAATCTT21.1363636363636365No Hit
CGCTGGGATACATGACTAGCCATGTGCAGGACAATTAACACTGCAGCCCT21.1363636363636365No Hit
GAGTTGATACAGTTTTAAATAGCAACAAAGTACACAGTGGTGGAAAATTG21.1363636363636365No Hit
GCTGGGACTACAGGCGCTCGCCACCACCCCTGGCTAATTTTTTGTATTTT21.1363636363636365No Hit
CTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGA21.1363636363636365No Hit
GTGGTATAATGATACATTAAAAATAATTTGTTGTGGTAAATTGATAGAAA21.1363636363636365No Hit
CCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGG21.1363636363636365No Hit
GGATTCGATGCCGGGATGCGTGTGACGCGCCACGGTCGCATCGGGTGCGA21.1363636363636365No Hit
TGTAAACAAAAATGAATCACAGGTTTCATTTTTGTATCCTTTTCAAACTG21.1363636363636365No Hit
CAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCC21.1363636363636365No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
TCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATT21.1363636363636365No Hit
GATCGCCCGCCACTGACCGCACGAAGCACGACCCGCCCTGGCCGCGCAGC21.1363636363636365No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG21.1363636363636365No Hit
GTACACCTTCAGACCAGTCTGCAACCTCAGGCTGAGTAGCAGTGAACTCA21.1363636363636365No Hit
CTTGTCAGTGGGGACCCCTCGCAACCCTGCCTGTCACCTGGGAGGGTGGG21.1363636363636365No Hit
CACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACT21.1363636363636365No Hit
ACCAAGGCAAGAACTCCCTGAAGGGTGAATCACTTGGTTAAGAATCTGTT21.1363636363636365No Hit
GAGCCTGAGTATACCAAGAAAACCAATATTCGCATTACAGGTTGCTCCTG10.5681818181818182No Hit
GAGGAAGACCAATGAACACCTTGAGACTTCCATTCATTGAGGGGCTTTCT10.5681818181818182No Hit
TGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGT10.5681818181818182No Hit
TACACACACACACACACACACACACACACAGAGTTTAATTAAGCAAAGAA10.5681818181818182No Hit
CTTTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGTACTCT10.5681818181818182Clontech Universal Primer Mix Long (95% over 21bp)
GGGCTCTGTGGGAGTGGGACTTGCTGAGCGAGACCACTTGGCTCCCTGGC10.5681818181818182No Hit
TCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCAGGTACAGTGA10.5681818181818182No Hit
CTGCCTGGGAGATCATTTGCTGATCCGAGGGTGACTTCTGCCTCAGTTTC10.5681818181818182No Hit
AAATGGTGGAAAAGGACCAAGATGGCGGCCGCAAACTGACACCTCAGGGA10.5681818181818182No Hit
ACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGA10.5681818181818182No Hit
TCCATAAACTCACGTCCTAACCCCCAGGACCTCAGAAGATGATCTGATTT10.5681818181818182No Hit
GTGTGCCACTAAGCCCAGCTCATTTTTGTATTTTTAGTAGAGACAGGGTT10.5681818181818182No Hit
AGCAAAGACTACTTTATTTCCTATGATTCTATGGGTGAGGAATTCACACT10.5681818181818182No Hit
CGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAG10.5681818181818182No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.5681818181818182Clontech Universal Primer Mix Long (96% over 26bp)
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG10.5681818181818182No Hit
GGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCGGGGTCCGGTGCGGAGTG10.5681818181818182No Hit
CTACTGCACTGTCCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACCGACT10.5681818181818182No Hit
GGTAGGGCGCTTGGGAACGGATAACGTTGCTCTACGGGAGACCGCCTCCG10.5681818181818182No Hit
GGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAGTAC10.5681818181818182Clontech Universal Primer Mix Long (95% over 21bp)
ACAGCACCCATAAGTGAAGAGGTAATGCCACCAAAGGAAACCAGAGTGGA10.5681818181818182No Hit
ATTTTGGCTGGCTCGGCTTTAACCTTGTTCCCAGAAGCATCTTTTCCCTT10.5681818181818182No Hit
GACCGGAGCCCGAAGTGGCGTGCGCAACCATAATTCAGGCATGCACCCTA10.5681818181818182No Hit
CCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCA10.5681818181818182No Hit
CTCTGGAGGCTGAGGCAAGAGTATCTCTTGAGCCCAGGAGTTTGAGGTTG10.5681818181818182No Hit
CCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGGTGACTCTA10.5681818181818182No Hit
AGAGGAAGGTGAATGTTAACCAGCAACAGGACAAAGCCATCCTCAAAAGA10.5681818181818182No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.5681818181818182No Hit
GTGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGC10.5681818181818182No Hit
ATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCA10.5681818181818182No Hit
CATCAGCACCATGCAAGGTTCATAGCCATCAATATTTGTCCTTGCACCTG10.5681818181818182No Hit
GGCGAAACCCTGTCTCTACTAAAAAAACAAAAATTAGCCAGGCATGGTGG10.5681818181818182No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT10.5681818181818182No Hit
TGCCTGTAATCCTTGTATTTTGGGATGCCAAGGCGGGCGGATCACCTGAG10.5681818181818182No Hit
CCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGG10.5681818181818182No Hit
CCTCAGACCCCTGAGTAGCTGGGATTAAATGTGGCCAACACCAGGCCCCG10.5681818181818182No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA10.5681818181818182No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.5681818181818182Clontech Universal Primer Mix Long (96% over 26bp)
TTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAA10.5681818181818182No Hit
CCTCTGGCCGCTGCTCTCCCGCTACCTTCTGGAGAACCTGGGCTGGAGGG10.5681818181818182No Hit
ACATCATCCAAGAGAGAAAAGATGGGAAAGTTGCTGACACAAGAAAGCCA10.5681818181818182No Hit
TTACAAAGATGAGAACACAGGAAAGGATAGACAGGTAAAGGAAAGGATAT10.5681818181818182No Hit
GATGTGGGCTTTGGATACTAAGCAACCAAGTTCAGATTTTCATTCTACTG10.5681818181818182No Hit
GTGTGGTGTTGACCACGGACACGGGCAGCTTGAAGAACTTGTTCTGGCTT10.5681818181818182No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA10.5681818181818182No Hit
GCTATGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGA10.5681818181818182No Hit
GTTGGTGACAAGCGTGGCGGTCTCGGCCACCACGCCTTCGAGTTCGCGGA10.5681818181818182No Hit
GCGCTAACCGGAAAAGAGGCCATGAGCAGCAAAGTCTCTCGCGACACCCT10.5681818181818182No Hit
ATGTAAATGTGTACTGTGTCCTGCCGTATTTTTCAATCTCTCTTAAGGTA10.5681818181818182No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT10.5681818181818182No Hit
CTTCCAAATATTACAAAAAGAGTGTTTCAAACCTGCTCTATGAAAGGAAG10.5681818181818182No Hit
CTATTACACGGCTAAGTTGAATAGTTGTGGTGGAGACTATATGTGATCTG10.5681818181818182No Hit
GCCGGGGAGGGGGCACTTCCTTTGTGTCAGTGACAAGTGGGTTATGTTGA10.5681818181818182No Hit
TCTGAAGACACAGCTTTTTCCTTGTTCTTGGCTGGTGGGTGCACAAGGAC10.5681818181818182No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT10.5681818181818182No Hit
GAGTAAACGTTGATGTTAAAATGCATGAATGGTATTTGTTGTCTGCTGAA10.5681818181818182No Hit
GAGTGTACCAGGTCTGTAGCAGAAAATAATCAACTAAATGTCAGGGACCT10.5681818181818182No Hit
GGGAAATAACAAATCACTTGATGATTTTTGTCTTTTTATGGGAAACTTTT10.5681818181818182No Hit
GTTCAGATCACATGCCCATTTTCTAATGGGATTATTTGTTTGTTTGTTTT10.5681818181818182No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA10.5681818181818182No Hit
CCTCAAAACTACATTTTTTAAGAGATAGGGTCTTGCTCTGTCACTCAGGC10.5681818181818182No Hit
AAATAGTCCTCCACGCGCGTTCCCGTGACATCGCGGTGCATGCGCCATTG10.5681818181818182No Hit
GGACATAATATTTACAAAAAGTGCTATGAAAAACAATGTATCAGTTGTTT10.5681818181818182No Hit
CAGCTGTCCCAGACATCCCAGCTGAGGTCCAAATATACAAGCTGTCTCTT10.5681818181818182No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGAAGCAGTGGTA10.5681818181818182Clontech SMART CDS Primer II A (100% over 26bp)
CTGCTCCAAGGCTCCCTGGCAGGACCTGGCCCGGCAGAACCGCTTCTTCA10.5681818181818182No Hit
GAAATATGGACTCCAGGGAGGGCAATCAGCGGCCCATAAGCCGCCAATCA10.5681818181818182No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC10.5681818181818182No Hit
CTTCTGAACCAGTGCCTGTTGTGACTTCTCCGTATCAATTGCATTCTGGA10.5681818181818182No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT10.5681818181818182No Hit
TAATTATGGAAATAAAATTATCTACAATCACACCAATCTGATTATCATTT10.5681818181818182No Hit
ATCCTACAAAGTAAAGAAAATCAGAGTGGCATCAGACTTAAAATTAGCAA10.5681818181818182No Hit
CAATTCCCTCTCCTGCTCTTCTAGCTCCAGCACTGCCTGGGCTGAGCTCA10.5681818181818182No Hit
TATGTGTACAATCTGTTAGAGTATCTTCCAGCTATGTCAGCTCTAACTGT10.5681818181818182No Hit
ATTCCATCACAATCGAGTTGGTTCCATTCCATTCCATTCCATTCCATTCC10.5681818181818182No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG10.5681818181818182No Hit
CGGGAGGTGGAAGCCGCAGTGGGCAATGATCATGTCAGAGGTGTGTGAAC10.5681818181818182No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT10.5681818181818182No Hit
GATCGTGACACTGTAATACAGCCTGGGTGACAGAGTGAGACTGTGTCTCA10.5681818181818182No Hit
GAGGAGAGGGAGCAGCAAAGACTCTGGGATTTTAGGAAGAACCAAGCTAC10.5681818181818182No Hit
CATTAAAGGTTATTATTTTTATGTGTGAATTTGATCCTATAATCATGATG10.5681818181818182No Hit
CAATAAAGCTGGGGGGAAAAAGTCAAAGAAAAGCAAAACTACAATCAAAA10.5681818181818182No Hit
ATCAGATACCGTCGTAGTTCCGACCAAAAAACATTCCGACCCGAAGCGTC10.5681818181818182No Hit
CAGTATACCAGTGAATTTTGCATTCATTATTCAACAGGTATTTGCAAACA10.5681818181818182No Hit
GCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTTAGCTTT10.5681818181818182No Hit
ACCTGACCTAGCATGTCGCCAGCCTCTTGGTGAAACGCCTAAAGTGTGCT10.5681818181818182No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.5681818181818182Clontech Universal Primer Mix Long (96% over 26bp)
GGTCTTGACCGTCAGCTCGTCCGGGGCGAAGTGGGGGGGCAACAGGGGGC10.5681818181818182No Hit
GTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTAGCGCGC10.5681818181818182No Hit
GGCTTGAGCGTATGTCTCGTCATAACAAAAGTATTACGCGACACACGGAC10.5681818181818182No Hit
GTACATGGGACAGCATCCTGACCCGTGGGGCCTCTGTGCAGCTGGTGTTT10.5681818181818182No Hit
AGTCTCAGAGTCACCTTTTGCCATCACCCGATTCAAGGTCCTTGTCCTCT10.5681818181818182No Hit
ACATGGGAAGCAGTGGTATCAAAGCAGAGTACATGGGCTGTCTCTTATAC10.5681818181818182Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CTTTTTTTTTTTTTTTTTTTTCGTTGATAACACAGGATCACATTTACGAG10.5681818181818182No Hit
AAACGGGCCACGCTCGGCATCGCGGCGGCGAGCCTGGTGGTGAGCTTCGC10.5681818181818182No Hit
AAATATAGACTCAGTAAATGTTTGCTAAGTTGAAATGGATTCTGGACTCT10.5681818181818182No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGC10.5681818181818182No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC10.5681818181818182No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC10.5681818181818182No Hit
GATGATACGGACGCTGCCTTCGCCGAGGCAGCGCACGTCACGCGCATCGA10.5681818181818182No Hit
GCTGAAACTTAAAGGAATTGACGGAAGGGCTCCACTCCTGGTGGTGCCCT10.5681818181818182No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5681818181818182No Hit
CGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGT10.5681818181818182No Hit
CTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAG10.5681818181818182No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA10.5681818181818182No Hit
ACCTTCAGTTTAGCGTCATTCCAAAACCACACCCTTGCAAAGCTTTGTAC10.5681818181818182No Hit

[WARN]Adapter Content

Adapter graph