FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCG21.6528925619834711No Hit
GAGCAAAATGATAGGACCACCCTGGGCCCCAGCTCTGGCTTTTACCATAG21.6528925619834711No Hit
AAAGTATTCAAATACGTGTTGAATTGTTGGCTATCAGCAGTGCATGCCAC21.6528925619834711No Hit
CAAAGTTCAACTTCAAACAGCTGAAATTTGTTTCATAGCTGTTGGTCACC21.6528925619834711No Hit
ATATACTTAATTGAATGGTAATACAAACACAACACATTAAAATTTGTAAA21.6528925619834711No Hit
ACCTAATCTCACCCACTGAAACATTAGCCTCGGGGCCAACTCTGGCCTCA21.6528925619834711No Hit
GCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTG21.6528925619834711No Hit
ATGTGTGATGAGGTCTTGAGTAGATCCTGGTGGAAGGTCATAGTCTACAG21.6528925619834711No Hit
GTACATGGTGGTGCCGCCAGACAGCACTGTGTTGGCGTACAGGTCTTTGC21.6528925619834711No Hit
TGGTTGCCCCTCCGGCGAAATTCAGACTCGTTTACGCCTTGGCCAGATAA21.6528925619834711No Hit
GTCCGGTGGGCGGGGGGCGGGGGGGGGGGGGGGGGGCCCCCGGCGCGAAT10.8264462809917356No Hit
TGTCCATACTGTGCATGCTGGGTTATATTTTGGCAGATCATCTTCTCTTC10.8264462809917356No Hit
GTGTGAAATTATATAGTTTTTAAAAAATGCAGGCTGGCGTGATGGCTCAC10.8264462809917356No Hit
GCAGTAGCGCTGTCCCCTTTTCCTTCCTGGGCATCTGAACCCCCTGGGAT10.8264462809917356No Hit
TCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAA10.8264462809917356No Hit
GTCCCACCCTCACACGATTTTTTACCTTTCACTTCATCTTGCCCTTCATT10.8264462809917356No Hit
CATGCAGTGGGTGTGGGGGGGCATCTGGCCCCGACACCGCTTCTCTTTGC10.8264462809917356No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT10.8264462809917356No Hit
TCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTC10.8264462809917356No Hit
GATGAACTCCTACTAATTATTTTGGGCGTTTTCATTCAGCTTTGCGCTTC10.8264462809917356No Hit
CCGGAGATCAGGATCCCGGGCGCGAGCAGACCCGATCCGGCCTCGGCCAC10.8264462809917356No Hit
CCCTCCTACAGAGGAACATCCTTCTTGGCCCCCAGGGCAGAACAGAAATG10.8264462809917356No Hit
CTCTTCCTCTTATAAGCACACTAATCCCATCATAAGGATGGGATCCCATC10.8264462809917356No Hit
CCCACGCACAGGATCTGCTTCTCTTCCATGAGGCTACTCCCAGAGCTTCC10.8264462809917356No Hit
CGGATAGCCGGTCCCCCGCCTGTCCCCGCCGGCGGGGGACCGGCTATCCG10.8264462809917356No Hit
NCACTGGTGGTTCTACTGACCCAACTGGGGGCAAAGGTTTGAAGACACAG10.8264462809917356No Hit
CCTCTTTGAAGCGTTTTCCAACAGTATAGATCTCATGAATCAAATCCTCC10.8264462809917356No Hit
TCCCATGCCTGACCCTCTTTCTACATCTCAATCATTGTATCATTAGCCTG10.8264462809917356No Hit
GTGTCGGGGTTGTAGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAAC10.8264462809917356No Hit
CAACAGCCGTCCTTACAGGACACACAGTGTATGCTAATTGCACACCACAA10.8264462809917356No Hit
GTACTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT10.8264462809917356Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGG10.8264462809917356No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACCCGG10.8264462809917356No Hit
CTCCTGACTCCTTCCAATGTGGAGAAGTCTTGCTAGAGGCTCTTTCTGGG10.8264462809917356No Hit
GGTACTTACCCACCCACAGGTCACGCTCAGGACCCCACATCTCATTCTGA10.8264462809917356No Hit
GTGGCTACTCACAGTGTCCAGTTGAAGTAACAGTGGTTCAAGTTCTGGTC10.8264462809917356No Hit
GACTACCACAGCGGCGTGAGTGCCTCCATGAACACGGATGAGGAGTTCGT10.8264462809917356No Hit
CCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGG10.8264462809917356No Hit
TCCTAGAACTGAGGGTTCCTCTCTTTTTTTAGACCATACAGGGTAACTTC10.8264462809917356No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.8264462809917356Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAGCAATGGCTTTCGCGAACCGAGCACAGTCCAGCTGTAAGTAAATATCC10.8264462809917356No Hit
TGCTTGCAGTTGGCTCATCCAGTTTCTGACATTTAAGAAGCTCTGTTGAC10.8264462809917356No Hit
CCTCCTGGCGACCGGGCAGGCGCATGTCGGGCAGGTCGAGGCCTTCCGTG10.8264462809917356No Hit
GGGAAAATGTGTAGCTGTTATTATTATGGCTGACTTGTTCTGAAGAACTC10.8264462809917356No Hit
GCATAGCTGCGGTGTCTGCGGGTTCGAGATCGAAGGCCCCCGCGACGAAC10.8264462809917356No Hit
TCTGAAAATATTTACATTTTGCTAACCTAGTTTGTTACTTTAAAAATAAG10.8264462809917356No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.8264462809917356No Hit
CATGGACATCGAAGTCGAGGTCGGCGTTGGGCGGGATCGGCGCACCCGGC10.8264462809917356No Hit
CCCCAATTCCTACTTCATGGATGTGAAATGCCCAGGATGCTATAAAATCA10.8264462809917356No Hit
TTTCTAGACCTACCCTGAGCCAGAGGGGAGCCCACTGCCCTGAAGGGTGA10.8264462809917356No Hit
AAAGTGGACTCATTCCAATACAGGACTCGTTCGAGGCCCGGTAATTGGAA10.8264462809917356No Hit
GATATATGATGTTTTTCTGCTGTGTATAAAGTGGGCTAGAAGGATCCTCA10.8264462809917356No Hit
CTACAGTTCTGTCATCTTTTTTTTTTTTTTGGAGATGGTCTCACTATGGC10.8264462809917356No Hit
TTATAGGACATCCAAGTAACACCGACTTATAAAAGCAAACACTGTACTTA10.8264462809917356No Hit
TAGCTGGTATGACGCGAAATAAGGATCCCCAAGGGCGACACCCCCTAATT10.8264462809917356No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.8264462809917356Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCCATGAGGGCGACGTCGACAGGCATTCGACGTAGCACGTCAAGGGCCT10.8264462809917356No Hit
GAAGAAAATTGCATTATTGGGAAATTGAAACTTAAGCGGGGAAGGGGATG10.8264462809917356No Hit
GATAAACACTGTGCAAAACCTACGTGCGAAGACATTTGAAGGGGGTGTCT10.8264462809917356No Hit
GGAGAACAGTGAGCATGTGCTGAAGATACTAGGGGAGAGGATCTGGTGAA10.8264462809917356No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTGCTCCATTCATTTTAACAAA10.8264462809917356No Hit
GAAAAAAGACAAAACAAACCAAAAAGCACAGTGCATCATTGAGTATGTGA10.8264462809917356No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTT10.8264462809917356Clontech Universal Primer Mix Long (96% over 26bp)
GTATGGAAGTGTAGACTAAATATAAAATACTCACCGGAGGCCAGGCACAG10.8264462809917356No Hit
ATCTAATGGAATTGCATGGAATCATCATCAAATGGAATCGAATGGAATCA10.8264462809917356No Hit
GTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTAGGTTGAAG10.8264462809917356No Hit
GTTCTATTCTCTTCTGGACCTGGTGGTTTAAAAGGGCATTTGAACATAAC10.8264462809917356No Hit
GTACAGTGGTGGCCCATCTCGGTCTGAGGGCTTCAGCCTATGGCGCAGGG10.8264462809917356No Hit
GTGCTACCCTCAGCAAAGGCCGATCTGTGTCTCCTCAACCTGAGGGTCAG10.8264462809917356No Hit
CTCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCAACCTCT10.8264462809917356No Hit
TGGCAAAGAAGTTAAAAACCTTGAAAAAAAATTAGACGAATGGCTAACTA10.8264462809917356No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTCTGTCTC10.8264462809917356Clontech Universal Primer Mix Long (96% over 26bp)
TTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTAC10.8264462809917356No Hit
ATTGGTATTAATTCGGGGCTCTGTAGTCCTTTCTCTCAATTTTCTTTTAA10.8264462809917356No Hit
ATCAAAATCCATGTACATAGGAGATGCTCAACAGGTACAAGCTCAATTGG10.8264462809917356No Hit
GTAGAGGGTGATGGTAGATGTGGCGGGTTTTAGGGGCTCTTTGGTGAAGA10.8264462809917356No Hit
GGCTCGGGGCCCCGGCCTCGCGCCGCCACCGCTGCGGCTGCCGCTGCTGC10.8264462809917356No Hit
AGGTTTGCATATATTAATATCTTGTCTTAGACCTGGTTATATATCTCAGT10.8264462809917356No Hit
TAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGG10.8264462809917356No Hit
ATGATAAGCCCTGCATGTAGCAAAGTTCCTGCCTTCACTGCATATGCATT10.8264462809917356No Hit
CCCTAGAACAGCAGGACATGGTCTGCTATACAGCTCAGACTCTCGTCCGA10.8264462809917356No Hit
AAATGGACCTAAACATAAAGCTTAAAAACTATAAAACTTCTAACAGAAAA10.8264462809917356No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG10.8264462809917356No Hit
CACAAGAACCAGACCCGGGAGCTTCGTGTCCTGTATGGCCCCCGACTGGA10.8264462809917356No Hit
GCTCTATCCTGTGCCAGTGAAAGATGTTTTTCTTTAAAGATCTTAGCAGT10.8264462809917356No Hit
GGCTTATGCATTTGTCTTAGCTTAGTAAAACAAATATGATTAATGGAAAC10.8264462809917356No Hit
GCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTG10.8264462809917356No Hit
ATTGAGACCCGGAAGGCTTCAAAGGCTGTCGCAAGGAGGAAGAACTGGAA10.8264462809917356No Hit
AGACCAGCCTGGCCAACATGGCAAAACCTTGTCTCTACTAAAAATACAAA10.8264462809917356No Hit
AAACTCTTCTTGGTCAACAATAAAATCAGTAAAATTGAGAACTTAAGCAA10.8264462809917356No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT10.8264462809917356No Hit
CCGTCGCCGTATCCAGCGCAGGGGCCCGTGCATCATCTATAATGAGGATA10.8264462809917356No Hit
GCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC10.8264462809917356No Hit
GAGGAGAGGGAGCAGCAAAGACTCTGGGATTTTAGGAAGAACCAAGCTAC10.8264462809917356No Hit
GCAGCGAAGTGCTGCTGCTCGACAGCTTCGCAGGCGCCGCCGAGCGCGGG10.8264462809917356No Hit
CGCTTCGGGCCCCGCGGGACACTCAGCTAAGAGCATCGAGGGGGCGCCGA10.8264462809917356No Hit
ACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACG10.8264462809917356No Hit
GCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTGGAAGACG10.8264462809917356No Hit
AGGGTATCCAGGATGTTGAGTCGTGGATTTGAAACAGAGATGAGGGCCAG10.8264462809917356No Hit
AGTAGGGAATTACTGTATTGTATTTTGTTAATAAATTATGGGAAAGAGGC10.8264462809917356No Hit
GTCCGGTGCGCGCGGGGCGCGGGGTGGGGGGGGCGGCCCCGGTCAAATAT10.8264462809917356No Hit
CACCTTCTCCTGGTTGGTCATTTCGTTTGATAGTGCCCCACCAAGGCCTG10.8264462809917356No Hit
TAAGTGAGTTGTGTTCACCTCTAAGTTAGAGCTCAGAAATTAACACATTA10.8264462809917356No Hit
GGATGAGATCTGGAAATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGA10.8264462809917356No Hit
CCCTTGAAGAGATCTACAGCGGCTGTACCAAGAAGATGAAAATCTCCCAC10.8264462809917356No Hit
CAGCGGAGGTGCAGTGTTTAAAAAGGATGATATTGGACGAAGGAATGGGC10.8264462809917356No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC10.8264462809917356No Hit
GTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAAC10.8264462809917356No Hit
GTCTTGAACTCCTGACCTCAAATGATCTGCCTACCTACGCCTCCCAAAGT10.8264462809917356No Hit
GGGGTGGAGGCTGCACCCCGCGCCCACCCATCCACCAGCAGCCGCCGGAG10.8264462809917356No Hit
GAGGACATCTGATCTGGAGCTGGAAAGTGAATAGTAATACACAGTGCAAA10.8264462809917356No Hit

[WARN]Adapter Content

Adapter graph