FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATAGAAACAACTGTCATCGCCCATCCTCCCTTTCTGTGGATGAGGCG32.7027027027027026No Hit
CCACCATGCCTGACTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCAC32.7027027027027026No Hit
ACATGGGAGTGGACTGGAATGGAGTGGAATGGAATAGAGTGGAATGGAAT32.7027027027027026No Hit
CCGGTGATCACCGCCGACAACCTGCAGGTCGGGATCGACACGGTCGTCTA21.8018018018018018No Hit
GGCGTCGTGGGGCCATAACAACCGCACCGTCGCCCTGCGTATTCCATGCG21.8018018018018018No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT21.8018018018018018No Hit
GTCCCAGAGCCTTCGCGACCCCTTCGCCGTAGGCCGAATCCGCTTTGATG21.8018018018018018No Hit
GTCTTATATTTATTTCACACATCATAAACACCTTCCACCACGTCAAATAT21.8018018018018018No Hit
CGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCATGAA21.8018018018018018No Hit
ACACATGATTATATAAGAATTATTAGAAAATTAATACAGAGAAGTACTCT21.8018018018018018No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.8018018018018018Clontech Universal Primer Mix Long (96% over 26bp)
CTCCCTTCCCGCTAGGGGGGCCTGTGGGGCCCGACCATCTGCCAACCCTT21.8018018018018018No Hit
GCCCTGCACCAAATGAAATTAAGAAGGCTTAGTCTCCATCTAATTACCAG21.8018018018018018No Hit
CATTAGGAAAAATGGAGAAGGTTTACTCTTTCTTCCATAATTTCTCCTGC21.8018018018018018No Hit
GCCTCCATGTTACTTCTTCTCCTTCTTGCCCGACTTCTTCTTGTTGCCAT21.8018018018018018No Hit
CCGACGATGGCCCAGGCCGCCGCCAGCCCCGCCGCCACGGCGGCCGCCAG21.8018018018018018No Hit
GAAGAGGAGAGACCTTAAAAAATGTTTATTGCCAAAGTTAAGTTTCTATG10.9009009009009009No Hit
CGCCAGGCATGGCGATGCATGCCCGTAATCCCAGCCACCTGGGAAGCCGA10.9009009009009009No Hit
GTTCTGGAGTGGCCCGTTGCAGACACTGAACCACCAGCCAGCTGCATTTG10.9009009009009009No Hit
TTGTTGTGGTCACCTATAATGTGCCAGATACCATGCTGGGTGCTAGAGCT10.9009009009009009No Hit
TAATAGAACAATATAATTTGGTTTGACGCTTTCTTCGATAAAATGAGAAA10.9009009009009009No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATCTGCGTTTATACCA10.9009009009009009No Hit
AGTTGGAGTATGTGCGCAGGGTCAGGACAGCATCTCACATGTGAGGGCCG10.9009009009009009No Hit
GGATATGAGTGGGAAATTGCCTTCTAAGGTCAATGTTTTATGGGAGAGAA10.9009009009009009No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.9009009009009009Clontech SMART CDS Primer II A (96% over 26bp)
GGCATAGAAACAACTGTCATCGCCCATCCTCCCTTTCTGTGGATTAGGCG10.9009009009009009No Hit
TGCCATTACGGCTCTGCTGGAGGAAGTAAACAGGGCCTATGTGACTGCAC10.9009009009009009No Hit
GCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGA10.9009009009009009No Hit
TGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGC10.9009009009009009Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGCAAGACGGACCAGAGCGAAAACATTCTTGGCAAATGCTTTCGCTCTG10.9009009009009009No Hit
GGGCAACAATAACAACAACAACAAACTCATTTCTCCAATAAAATTCAAGA10.9009009009009009No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGGTTTAAAACAAATCA10.9009009009009009No Hit
GGGCAACAATAACAACAACAACAAACTCATTTCTTCAATAAAATTCAAGA10.9009009009009009No Hit
ATATTGGGGATATCTCTGGATTTACAACGACAATTAAACCATCTGCTGAT10.9009009009009009No Hit
TCCCCGGTTCAAGTGAATCTCCTGCCTCAGCCACCCGAGTAGCTGGGGTT10.9009009009009009No Hit
CATTTTGGGTATAAGTCTGAGATGCCCATTAAAAGTCCTGGAAGCAATGT10.9009009009009009No Hit
CCGGGAGGAAGCGGGTGCCAAGACCGGCGACGGGAAACACGGCTTTGCGG10.9009009009009009No Hit
GCTTTGTGACCACATATTATTTCACCTCTCCAGGGCTTTGATTCTTCTTG10.9009009009009009No Hit
TTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC10.9009009009009009No Hit
ACTTTATGCACAAAATGTAGGGTTATAATAATGTTAACATGGACATGATC10.9009009009009009No Hit
CCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCCCAG10.9009009009009009No Hit
TACTGGAGAGTACATACTGTTTGATTCTATTTGTATACAATTATTGCAAA10.9009009009009009No Hit
TACTTACGCTACTTTTATTTTACAGTTGAGTTAATTGAGGCACAGAGATG10.9009009009009009No Hit
CTTAACAACCGACACTCCTACAAGATTTAGAAAAAAGTTTACAACATAAT10.9009009009009009No Hit
GTACCATTTTGCTAAGCCTGTGTTGACAACTCATTATGTCAGTGGGAAGA10.9009009009009009No Hit
GTTTTGAAACACTCTTTTTGTGGAATCTGAAAGTGGATATTTGGATAGCT10.9009009009009009No Hit
CTCTCAGACCATAATGCAATAAAAATAGAAATCAATACTAAGAAGATCAC10.9009009009009009No Hit
TCTTGGCGGTGCTATCCACCGGCACGATGAACTTGCTGGTGAACACCTCG10.9009009009009009No Hit
GCCCGCCTCCACTTTGGTAAGCGGAGGCGGGCAGATCACTAGAGGCTAGG10.9009009009009009No Hit
CGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATC10.9009009009009009No Hit
GCGTTTGAGGGAGTAGTAGAAGCCCTTCCACTGGGCCCAGGTGATGCCAT10.9009009009009009No Hit
ATAGCTTCTGTTTCCTTATAGTAAGGCAATGCCATGTAAAATACGGTTTC10.9009009009009009No Hit
CAATTGCACTGAAAGTCATCCTCAGATCTCATTACAAACTGAGAAAGTCA10.9009009009009009No Hit
TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCG10.9009009009009009No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTGAGAAAAAGTATCGGGTTTTTAC10.9009009009009009No Hit
GATTGTGAGATAGTCAGTGCCAAATCTTCCTAGATGAACGCCCTCATTCC10.9009009009009009No Hit
CAAAGGTTGCAGTGGGCTGAGATCTTGCCACTGCACTCCAGCCTGGGTGA10.9009009009009009No Hit
TGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAAT10.9009009009009009No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT10.9009009009009009No Hit
CTGTTGAATCTACAAGTGGAGATTTGGACCGCTGTGAGGCCTATGGTAGT10.9009009009009009No Hit
AGTCCCAACTACCTGGAAGTCTGAGGCAGGAGGATTGATTAAGCCCAGGA10.9009009009009009No Hit
GGTCCAGGCCGTGTTCAGGAAATCGGCCTCCTCACCGCGCTTGTTCTGGA10.9009009009009009No Hit
TTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCAC10.9009009009009009No Hit
GATATAAACTAAGACACTGTATTCATGGTAGTTAGGAGTTATTTGGATTG10.9009009009009009No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.9009009009009009Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTACAGCTAAGTTCAAATGTTAATTTTCTGGAAGTTCGTGTTAGTTATTT10.9009009009009009No Hit
ATATTATTGTGTTTTTTCCTTTCATAGCAGGCAAAGCAAGCTCTAATTGG10.9009009009009009No Hit
ATCCAGCACTAGGGATCATGTCTGGTTGACTGACAGAGGCCCTGCTAGGA10.9009009009009009No Hit
ATAAAAACAAAGTACTTAGAAGAAAACAAAATAAGTCAACTTACCAGTTA10.9009009009009009No Hit
AACTAACACCCGTTGATTTTGAGTGCATTTGGTTTAAGTGGGAGTGCTGA10.9009009009009009No Hit
GCAAGAAAAAGTAAACTAGCTGAAGAGATAAACAACGAACTGAAAAAAAA10.9009009009009009No Hit
CCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCCA10.9009009009009009No Hit
GAAGTATGACGGTCGAACCAAACCCATTCCAAAGAAAGGTACTGTGGAGG10.9009009009009009No Hit
TCAATGAGGCTGGCGTCCGTGTGCTATGCCAGGGCCTGAAGGACTCCCCC10.9009009009009009No Hit
AAATGGATGGACTCATCATCGAATGGATTCGAATGGAATCATCGAATAAA10.9009009009009009No Hit
ATGTATATCTTTGTCATTAAATTCTAAACTCACTAGTTCTTTTTAAGTTT10.9009009009009009No Hit
GTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCA10.9009009009009009No Hit
GGGCAGCTCGTGGAGCAGCTCGCGCACAGGATGCACTCGTACAGGCCGTT10.9009009009009009No Hit
ATACAGTGAGACTGCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATAAAAA10.9009009009009009No Hit
AGCCCTGCGTGGGTATCGATGTAGGCGAACGGCTGCTCCTTGCGCGACAT10.9009009009009009No Hit
CTATATACATGATCTGGTAAAGTGACCTATGCTTGCCAATAAACTCTACT10.9009009009009009No Hit
AACGTAGTGTGTGCAGTGGTAATTTGGAAATGTCTATCCCATCAATGACA10.9009009009009009No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAATGATCCAAGATACAA10.9009009009009009No Hit
ACTTATTACACAGGATTTTTGTCTTTGTGATTTTCTGATCTGATGGTGTC10.9009009009009009No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCTGTC10.9009009009009009Clontech Universal Primer Mix Long (95% over 21bp)
GATTGAAGGCTCCATCATCTTCTACCTCTAGCCACTGACAAAGGCAAGTA10.9009009009009009No Hit
CTTTTACTATGTAATCACAAAAATTTAAAAAGAAAAAATTTAAAAAAAGA10.9009009009009009No Hit
CCCCTGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.9009009009009009Clontech Universal Primer Mix Long (96% over 26bp)
AAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGG10.9009009009009009No Hit
GTTCACAATAGCAAAGACATGGAATCAACCTAAATGCCCATCAACAGTAG10.9009009009009009No Hit
GACCACCATCACCATTAGCTGGAGAACCAAGACTGAGACGATCACTGGCT10.9009009009009009No Hit
GCCTCTTACCTTCTCCCAGTTACCAAACCTTTTGATTTTCTCAGCTGTAA10.9009009009009009No Hit

[OK]Adapter Content

Adapter graph