FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAGGAGGTGGACGTGGGTTTGGCTGCCGATGTAGGAACACTGCAGCG43.6036036036036037No Hit
CTGCATTCTGATCCACTCCACTCAACTCCACTCCACTGTTCTCCATTCTG32.7027027027027026No Hit
AAGTAAGTAAATATGACTTTTGGAAAGACCAGCTCTACCTAGTTTGGTAG32.7027027027027026No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTT21.8018018018018018Clontech Universal Primer Mix Long (96% over 26bp)
ACTGATCCACATGATGTTTTAAAAATATACTGGCCTGGAAATCTGAAGAC21.8018018018018018No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG21.8018018018018018Clontech SMARTer II A Oligonucleotide (100% over 23bp)
TTACTATGGAAACCCAGCTGCCATCGCTATGTCTCTGCAAAAGACCCCTC21.8018018018018018No Hit
GTCCTGGCAACCCCTGATCTTTCTTCTGTCTCCAGGGTTTTTGGCTTTTC21.8018018018018018No Hit
ACCTCACTACGAGCCCAAAAGCTTCGGCCAGTGGCAGGAGCAGTCCAGCT21.8018018018018018No Hit
GTTGATGCCGTCCCGGCCGGTCAGCGCGCCCTCGAGGTTCAGCCCACCGA21.8018018018018018No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG21.8018018018018018No Hit
GTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAG21.8018018018018018No Hit
GTCTAAATAAAGCCTTTCTTTCTGGGTATCTTAAAAATTACTTATGGCCC21.8018018018018018No Hit
GCCCGTTGCCGCCTGCGCTCCATAACGCGACATCCGGAAAATGTCTGGAT21.8018018018018018No Hit
GCAGGTTGACGCGCCGGGCGCACCACAGCACGACGGGCACGATGGCGATG21.8018018018018018No Hit
TCTTTGAAGTGATGATTATTTTAATTTCGTAACTCTGTGGAGTGGGATAT10.9009009009009009No Hit
TTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCAT10.9009009009009009No Hit
TGCCAAGAGAGAGTAAATTTGGAACGAATCGATGTCAACGCTTACAAGAA10.9009009009009009No Hit
ACCCTGTGAGTTGAATGCAAACATCACAAAGAAATTTCGGAGAATGCTTC10.9009009009009009No Hit
AAACTCTCCTTTTAACCCTGCTTTAGCTGTGTCTCTGTGATTCTGGTATA10.9009009009009009No Hit
CTTCATAGTATTTCACTATATGTTGTACTAGTTGTCCTAGAAAAATTGTC10.9009009009009009No Hit
TGATAAAAGTACTCATGTTTCCCCTATTTGGAAAAAAAAATTGCTTTTAG10.9009009009009009No Hit
CCCATATATACCTCACTATGCAAAAGGTATGCAAGAAATGAATGGCACAG10.9009009009009009No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG10.9009009009009009No Hit
GTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGAGCCCCTTCGCG10.9009009009009009No Hit
TGTGCCACCACGCCCGGCTAATTTTGTATTTTTAGTGGAGACGGGGTTTC10.9009009009009009No Hit
TAACAGTTCTTTACATATTCTAAATACAAATTCCTCCCTTAACTAATACA10.9009009009009009No Hit
ACTCTTACTTTTCTAAGTGTCTTTGGGCGTACTTTTCTAAGCTTTGGTAC10.9009009009009009No Hit
TAGTAGAGGGAATGGTTTTTCTTTGCTCCGTGGAGCCCAGCTTCCCTTCC10.9009009009009009No Hit
CTGCCGGGCCTGCCCGTCATCCGCGACCTGATCGTGGACATGACCCAGTT10.9009009009009009No Hit
AGCCTATGTCACTTTCTTGCCTGAATCCTCCAGATGACCCACACCTGTAA10.9009009009009009No Hit
GTAAATATAATTTAGGGATTTTAGTGGATTTACTATAGGCAAAACTTTTA10.9009009009009009No Hit
GTTTTAAGAGCACCAAGGTAGAGGAAATCGCGAAAAGAACCATCTTGATA10.9009009009009009No Hit
TGCCTCAGCTGGGACCCACCGTGTAGACACACGACATGCAAGAGTTGCAG10.9009009009009009No Hit
TGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACA10.9009009009009009No Hit
GCCCTGATTCAGACCTTCATGGTCTGGCTCCAGATGTTTTCCGATATCGG10.9009009009009009No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC10.9009009009009009Clontech SMART CDS Primer II A (96% over 26bp)
CCCTAAATGGAAAAGAATTGACCAGGCTGCTTTGAGGGATAAAGATCCTG10.9009009009009009No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.9009009009009009Clontech Universal Primer Mix Long (96% over 26bp)
CTGACATGACACACACAGCTTCTCCACAAGGACACCTTTCTCACCATGTT10.9009009009009009No Hit
TACGGGGAGAGGTCGCGAGCGAGAGCGAGCGGGTGAGGGGCGCCTGCGAA10.9009009009009009No Hit
GCAGTAAACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTA10.9009009009009009No Hit
ACTATCGTCACGCCTTCCACGCCGGCAACCACGCCGACGTCCTCAAACAC10.9009009009009009No Hit
TAGTAGAGGGAGTGGTTTTTCTTTGCTCCATGGAGCCCAGCTTCCCTTCC10.9009009009009009No Hit
ATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTTTCATAC10.9009009009009009No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAT10.9009009009009009No Hit
GGTAAGTATATTCACATGGCAAGCCATACTGCCCATTCCCCTCCTGCCCT10.9009009009009009No Hit
TCCTTTTGCTGTAGACCCTTTCATTTTAGTTTCCAATTTGTGAAAATAAT10.9009009009009009No Hit
ACCTATAAGTGAGAGCGTGCAGTATTTAATTTTCTGTTTTTGCATTAGTT10.9009009009009009No Hit
GGTTCATGAGAGTCGGGTTCATGGCGCGATTATCGAATCGGGCCCGCTTT10.9009009009009009No Hit
GCACCAGCACTTCTCAGGTGGGGGAGCGTAAGGCAGGAAGGACTTCACGC10.9009009009009009No Hit
AAATCAGACTGAGCAAGGAAGCCACACGGAATAAAAAAGGCAAGACCCCG10.9009009009009009No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA10.9009009009009009No Hit
AGTTTATCTTGTATTTTACAGTACCCAAAATAGCTGGTATGTAAGAGGCA10.9009009009009009No Hit
CTTTATTATTATAAGCAGATCTTAACCTGTGTTCTGATATTTTGGCTGTA10.9009009009009009No Hit
CTTTGTGGCAGGCTTTGAGGATGGCGGGGCAGGTGACTCCCTGTCCTACC10.9009009009009009No Hit
GGGCCAGCTCCCGCAGCGAGGCCTTGGAGGCCACAATGCCGCACAGGTCC10.9009009009009009No Hit
CATGGTGGAGGGGGCAAACAAGCTCCCTCAGTTCCACACAAATCTGGGAA10.9009009009009009No Hit
GATACCAGCAAGGAATTGGGTGTGGTGGCCAGGAAACGCAGGTTGGATGG10.9009009009009009No Hit
ACATTGGCCACAAGAAGGGGAGATCAAGATACATGATCTGTGTGTCAGAT10.9009009009009009No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.9009009009009009Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCTACTTCCTTGCCAACACTCGCTATCTTTTGTCCTTTGGTAATAGCCA10.9009009009009009No Hit
TGCATACACACACAGAATAATATTCATGGACAAGTTTTAGGTTCTCTTTT10.9009009009009009No Hit
GCTTCAGCTAGATATTACATAAGAATACTGGATTTTTATTGGAATATTGT10.9009009009009009No Hit
CTCCCAAGGCAGTCCAATCTTCTTGTTTTTCAATATAATGTCCCTCAAAG10.9009009009009009No Hit
GCCTATGGCAGACATTGCTGATCAATCATAGCACTCTTTCCCACTGGGCC10.9009009009009009No Hit
GTTGTATCCAAACAAAGGTTCAACACTGTTAGTTGAGAACACACATCGCA10.9009009009009009No Hit
GAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAGTACCTGTC10.9009009009009009Clontech SMARTer II A Oligonucleotide (95% over 21bp)
CCCCAGCCTCCCAAATTGCTGGGAATACAGGCATGAGCCACCCACTGGGC10.9009009009009009No Hit
GTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCAT10.9009009009009009No Hit
CCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGAC10.9009009009009009No Hit
GGCAAACAGCTGGGAAGGTGGCTGTGATCTGACAGCATGCATCACCATCT10.9009009009009009No Hit
GTTTAAGTATGAGTACCAGCACTCATTCCTTGTGTAAATTGGGCACAATG10.9009009009009009No Hit
TAATCACTTTATTCAAATTGTTAAAATATTTGCTGGGTCATTGTTCATAG10.9009009009009009No Hit
CACCTACTGTGGGGGAACCAGAAACCTAGCTATCTGGCCAAAAGGAAAAA10.9009009009009009No Hit
CTTATGCACGCTTAACTATCTTAACAAGCTTTGAGTGCAAGAGATTGAAG10.9009009009009009No Hit
GAGAGGAACTACTTTAGAAAAATCACTATGTAGTTGACCCGTGAAAAATA10.9009009009009009No Hit
GAAAAAAAGTGGCTGTTTTGGACGCTGATATAGCAATGGCAAACTTAGAG10.9009009009009009No Hit
GTACATGGGAAGCAGTGGTATCAACGCATACAACAAAACAACCAGAGAAA10.9009009009009009Clontech Universal Primer Mix Long (95% over 21bp)
CAATGAATCCATTCGATTCCATTCTATGACGATTCCATTCATTTCCATCT10.9009009009009009No Hit
GTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC10.9009009009009009No Hit
TCCTAGTCTCTTGTCTATTATTCCACACAATATGTCCATGTGTAGCATAG10.9009009009009009No Hit
CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT10.9009009009009009No Hit
GGGTTTCACTCTGTCACCCATGCTGGAGTGCCCTGATGCAATCACGGCTC10.9009009009009009No Hit
CTGTGGATTGTAGAGAAAGGTATAAAAGATGTTGAAACAGAAGATCTTGA10.9009009009009009No Hit
ACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGC10.9009009009009009Clontech Universal Primer Mix Long (96% over 25bp)
GGATTTTTTTTTTTTTTTTACTTGGAGTTTAACTATTGTTTCCCAGGCTG10.9009009009009009No Hit
CCCCAAGACCATCCTCAATTTCGATTCCAGCACATAGATGTACTCTCCGC10.9009009009009009No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA10.9009009009009009No Hit
GTATTTATTCCCTATTTATTCTATCACTTGGCAGGATTTGCAGGATAATT10.9009009009009009No Hit
TAATCACTTTATTCAAATTGTTTAAATATTTGCTGGGTCATTGTTCATAG10.9009009009009009No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATT10.9009009009009009No Hit

[OK]Adapter Content

Adapter graph