FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2792
Sequences flagged as poor quality0
Sequence length140
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT451.6117478510028653No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT240.8595988538681949No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA170.6088825214899714No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG130.4656160458452722No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT130.4656160458452722No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA110.3939828080229226No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA100.35816618911174786No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA100.35816618911174786No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG90.3223495702005731No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA80.28653295128939826No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG70.2507163323782235No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA60.21489971346704873No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT60.21489971346704873No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAA60.21489971346704873No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT50.17908309455587393No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.17908309455587393No Hit
GCAGAGGAGAGAGGCTCCATAACCGAACACCAGGTACAAGGCCACCAGTC50.17908309455587393No Hit
ACGCAGAGTACATGGGTGGAAGGCTGAGGCACGAGAATCACTTGAACCCG50.17908309455587393No Hit
CCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGATTCTCTCGGGCC50.17908309455587393No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.17908309455587393No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT40.14326647564469913No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT40.14326647564469913No Hit
CCTTTAAGTCCTTGGTGGTGATTTCGGAGCTGGTGTCTACGGCTGCGTCT40.14326647564469913No Hit
TCTCAGCGCTCCGCCAGGGCCGTGGGCCGACCCCGGCGGGGCCGATCCGA40.14326647564469913No Hit
GTACATGGGCACATGCCTGTAGTACCAGGTACTCATGAGGCTGAAGTGGG40.14326647564469913No Hit
GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA40.14326647564469913No Hit
CTCCTGAGTAGCTGGGACTACAGGCACAACCCACCACGCCCAATTTTTTT40.14326647564469913No Hit
GTCTACAGCTGCTCGGGGGCGGTTTCTTGGCGGAGGCTTGGCCGGCTCCT40.14326647564469913No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA40.14326647564469913No Hit
ATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA40.14326647564469913No Hit
GTACATGGGGCTGCTCCGCCGCAGTCGCCGCTCCAGTCTATCCGGCACTA40.14326647564469913No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG40.14326647564469913No Hit
TATCAACGCAGAGTACATGGGACGGTGGCTCAAGCCTGTAATCCCAGCAC40.14326647564469913No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA40.14326647564469913No Hit
TCGCAATCCTGCGTAATCAACGCCGCAACTTTACGTCGGATTAGCTCTTC40.14326647564469913No Hit
TATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGC40.14326647564469913Illumina PCR Primer Index 1 (96% over 28bp)
GTATCAACGCAGAGTACATGGGAGCAGTGGTATCAACGCAAAAAAAAAAA40.14326647564469913No Hit
GTATCAACGCAGAGTACATGGGAGACCGTAGCGACGCGGGAAGTCCGGAC40.14326647564469913No Hit
GTACATGGGACACCAGCGAGCGGTGGGACCAGCCTCCACACCCCCAGATC40.14326647564469913No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA40.14326647564469913No Hit
TCTTTAAAGGCTGCAGCGTCGTCCTCAAATTTCGCACTGACCATAATGTG30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG30.10744985673352436No Hit
GCTGAGGCACGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGC30.10744985673352436No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT30.10744985673352436No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG30.10744985673352436No Hit
GGCTCTTCTTCTTTCTCACTGCCCGCTGCACTCCGCCGCTCTTCGTCTAC30.10744985673352436No Hit
GCCTCACCTCTGAGAAAACCTCTTTTCCACCAATACCATGAAGCTCTGCG30.10744985673352436No Hit
CCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAGAG30.10744985673352436No Hit
GTCTTGGAGATCGGGAGCGTCTTCGGTGCGGGGATCGCGAGCGGCTCCTT30.10744985673352436No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT30.10744985673352436No Hit
CTATAGCTTTAATTGAGATGTAGGCTGGGTAGCCAAATCCTATCAGGTTG30.10744985673352436No Hit
GCACAGTGGCTCACATCTGTAATCCCAACACTTTGGGATGCTGAAGCAGG30.10744985673352436No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA30.10744985673352436No Hit
GAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGGTCCC30.10744985673352436No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA30.10744985673352436No Hit
AAATGACATGGGCCGGGCGCTGTGGCTCACGCTTGTAGTCCCAGCACTTT30.10744985673352436No Hit
TAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAC30.10744985673352436No Hit
ATCAACGCAGAGTACATGGGACTTCGCGTAGCAGGCAGGGAACTGGCCGC30.10744985673352436No Hit
ATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAA30.10744985673352436No Hit
CAGTGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAATACAAAAAAATTG30.10744985673352436No Hit
GAGTACATGGGGCAGTCAGGCGTCGTGCGAACAGCAGCTGGTACCGAAGG30.10744985673352436No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTATTGGTATGTATCTCGTA30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACACAAAAAAAAAA30.10744985673352436No Hit
TATCAACGCAGAGTACATGGGGCAGCGGAGCCTTCGATAGCTCAGTTGGT30.10744985673352436No Hit
GTACATGGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAGG30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGCAGAGCCCAAATGAAGAAAGAATTCAAA30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCT30.10744985673352436No Hit
TCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAA30.10744985673352436No Hit
GAGTACATGGGACGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGC30.10744985673352436No Hit
ATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGCGGTCGGACAGCACTTCGGGCGCGCCGT30.10744985673352436No Hit
CATCCATCTTCCATTTAAGATGTTTCCAGGTCAGCAGGAACCATCATGAA30.10744985673352436No Hit
CCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAAAATTGTTTGAACC30.10744985673352436No Hit
GTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGCTTCGTGACTGGA30.10744985673352436Illumina PCR Primer Index 1 (96% over 28bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT30.10744985673352436No Hit
GCTATTGGATAAGACGTGCTGAGAATACTGAGTGAGGATTAAAAACCCTT30.10744985673352436No Hit
CTCTTGAGTAGCTGGGATTACAGGCGCCCGCCACCACGCCTGGCTAATTT30.10744985673352436No Hit
CCCCAAGCCCGGGGCGGAAGGACCTCCTCCAGCGGCCCCAGATCTCTGCA30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT30.10744985673352436No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC30.10744985673352436No Hit
GTGTGTAGATCTCGGTGGCGCGATCATCCCATGTACTCTGCGTTGATACC30.10744985673352436No Hit
GTACATGGGCGGTCGGACAGCACTTCGGGCGCGCCGTCGCGCGTCATGCC30.10744985673352436No Hit
CCTTCTGGCCAAGCTCGAGGCCAAAACCGGCGTGAACAGGAGCTTCATCG30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGCTAGAAGGCGTGACGTGGGGTCGAGAGC30.10744985673352436No Hit
CCTATGATCCCAGCACTTTGGGAAGCCAAGGTGGGTGGATCACCTGAGGG30.10744985673352436No Hit
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTT30.10744985673352436No Hit
ACGCAGAGTACATGGGAGAGCAACGCCAGGCTTGAGTGGCGATAGGAACT30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGT30.10744985673352436No Hit
GTGCAATGGCTCACACCTGTAATCCCAGCACTTTGGAAGGCTGAGGTGGG30.10744985673352436No Hit
ATCAACGCAGAGTACATGGGCGGTCGGACAGCACTTCGGGCGCGCCGTCG30.10744985673352436No Hit
GACTGACTCCATCCTCAAAATGCAGTCATCTGGACGGGGGGAGGCATCAC30.10744985673352436No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACCCAAAAAAAAAA30.10744985673352436No Hit
GTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGA30.10744985673352436No Hit
GGCGCAACCGGCAGGATTGAGCTGGAAGCCGAGCAGCCTCTGGAACTCGG30.10744985673352436No Hit
GCTCTCCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGATTCTCTC30.10744985673352436No Hit
GCTGATGCAGCTGTACAGTGCGCGCCAGCGGCGGCGGCTGAACCGGGGCC30.10744985673352436No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC30.10744985673352436No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.10744985673352436No Hit
TTTCATGGCCGTTGGCACTGCTCAACTTGTTCTCATCCTTCTTGTAAGGA30.10744985673352436No Hit
GCCGTGCCGTTACTCGTAGTCAGGCGGCGGCGCAGGCGGCGGCGGCGGCA30.10744985673352436No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.10744985673352436No Hit
ACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA30.10744985673352436No Hit

[FAIL]Adapter Content

Adapter graph