FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003658484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAAGGGTGACACCATTCAGCTCTACCTGGGGGCCAAGTTGTTGGACTC23.571428571428571No Hit
CATAGAGGGCTCCCAGAAGTGTGTGGCTGAGCTGGGTCCCCAGGCCGTGG23.571428571428571No Hit
GGACGGAGGTGACATTGTAGCTCTTGTCTTCTTTCAGCTCATAGATGGTG23.571428571428571No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG23.571428571428571No Hit
CCGCCCTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCT23.571428571428571No Hit
GCAGACCATCGCGCACCAGCAGCAGCAGCTCACCAACCTGCAGATGGCAG23.571428571428571No Hit
GGCCTGTCTCTGGTTCCGTCTCTGAGTCTGGTGGGCTAGTATCCCTGTCT11.7857142857142856No Hit
CTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCAGCAGGAGCTTCAGC11.7857142857142856No Hit
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC11.7857142857142856No Hit
CTCAGGCAGCCTGGCCGCACACACACACATGCATGCTACATATGTGTACG11.7857142857142856No Hit
GGTGTGGGCATCCCAGCCCCTGGGCACCAGCGTCAGCAGCTGGGGCGCTG11.7857142857142856No Hit
GGTGAATATAGAAAATCGGGATCACAGGAAAAATTACCATCAACCCTAAT11.7857142857142856No Hit
GGTCTGGGATGGGGATTTCCAGGGCTGTTTTTAGGTGTGCTTCCTTTCCT11.7857142857142856No Hit
CTTTGGCATTGTGTCTGGAATGCTCAATGTCAAATGGGACCGGATTGCCC11.7857142857142856No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.7857142857142856No Hit
ACCTCATAGAGGGCTCCCAGAAGTGTGTGGCTGAGCTGGGTCCCCAGGCC11.7857142857142856No Hit
GCTAAGAGCATCGAGGGAGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT11.7857142857142856No Hit
GAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCAACCAAA11.7857142857142856No Hit
TCCTAGTGCCATCCCTGCCCAATCTAGTGAAAAACCAGCTGTGTCCCGTG11.7857142857142856No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTAAAATAAAAAACA11.7857142857142856No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGA11.7857142857142856No Hit
CTGCTGGCCTGCCTGAGAAATACTGAGCTTCCTCTTCACTCTGCTCTCAG11.7857142857142856No Hit
CTTCTGGGAGCCCTCTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCA11.7857142857142856No Hit
CTTCCCTGATGGCTGCCATCCAAGTCTTCACTGGGAGACAGGAGAGGTGG11.7857142857142856No Hit
GTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAA11.7857142857142856No Hit
TCCAGGTAGGTGAACATGCCAATGACTATGCAGAAATTGCTGCTAAAGAC11.7857142857142856No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT11.7857142857142856No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG11.7857142857142856No Hit
TATCAACGCAGAGTACATGGGCCTTTCGGCCGGAACCGCCATCTTCCAGT11.7857142857142856No Hit
AGCCTGTGGCCCAGCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGGCCGGG11.7857142857142856No Hit
GGCCACTGCCCTGGAGCAGCTGCTGCAGGCCTACCCTAGAGACATGGAGA11.7857142857142856No Hit
GCTTGTGGTTTATTGAAGAGAGCAAGGCTGGTGGGCGTGGACTCAAAGCA11.7857142857142856No Hit
GTCCGGGTATTTCTTTCGGATCTTCTCGCCCTCAGAGCGGCGCTTCTCGA11.7857142857142856No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTCAC11.7857142857142856No Hit
GGTCAAGGCTGCAGTGAACTATGATCATGCCACTGCACTCCCACCTGGAC11.7857142857142856No Hit
CTCCGTGGCCGAGCTGCAGTCGCGCCTGGCCGCGCTGGGCCGCCAGGTGG11.7857142857142856No Hit
GAGGAGCGTCCTCAGGGTCTCCCCGCGCCCAGGGGTGGCCTGGAGGCCAA11.7857142857142856No Hit
GGTCAGCACAGATCTCCTTGGCCACAATGGTCTTGAAGATCACAGCTTCT11.7857142857142856No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.7857142857142856No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT11.7857142857142856No Hit
CTGTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGC11.7857142857142856No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCCT11.7857142857142856No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA11.7857142857142856No Hit
ATGTTGATGTCTTGGATGTGGGATGTGAGAGAAAAGAGTAAAGGTGGTGT11.7857142857142856No Hit
GGTGCGGAGGACTCGCTGGCTGATCAGGCTGCCAATGAATGGGGCAGGAG11.7857142857142856No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAC11.7857142857142856No Hit
TCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGA11.7857142857142856No Hit
CCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA11.7857142857142856No Hit
CCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACAT11.7857142857142856No Hit
GGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGC11.7857142857142856No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)