FastQCFastQC Report
Tue 10 May 2022
EGAF00003658667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52250
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1380.2641148325358852No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT900.17224880382775118No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG900.17224880382775118No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG880.16842105263157894No Hit
GTACATGGGAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCA870.16650717703349283No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA840.16076555023923444No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA770.1473684210526316No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT700.1339712918660287No Hit
TTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAAT690.1320574162679426No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG670.12822966507177033No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG630.12057416267942583No Hit
GGATAGATGTTATTCAACTCCTTCAGGTTGTCTTGAACTGACTGACTCAT620.11866028708133972No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT620.11866028708133972No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT570.1090909090909091No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT560.10717703349282295No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC540.10334928229665072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)