FastQCFastQC Report
Tue 10 May 2022
EGAF00003658771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477671
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA8000.16747929013902876No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT7170.15010331378710454No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA6970.1459163315336288No Hit
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT5180.10844284036502111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)