FastQCFastQC Report
Tue 10 May 2022
EGAF00003658796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003658796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5794
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT230.3969623748705558No Hit
GTACATGGGACTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAA210.3624439074905074No Hit
TACTACATCCATGGCTGTGACAGTTTTGCGCTTGGCGTGCTCCGTATAGG110.18985157059026578No Hit
GTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTCTGGTCGCG100.17259233690024164No Hit
GTACATGGGGAGACCAAGGGCTAAAGCTGGGAGACTGAAAAAATGCAGAC100.17259233690024164No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA90.15533310321021745No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.15533310321021745No Hit
GCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCA80.1380738695201933No Hit
TTCTTAGATTCAGCCGCCGAAGCCATACAGAGTGCGCCCCTGACGTTTCA80.1380738695201933No Hit
GTACATGGGCCTCACTCGCCGCCGACGACCTGTCTCGCCGAGCGCACGCC70.12081463583016915No Hit
GGGTGGGCTTATCCACCATCTTCTTCAGTTTTTGGACTATCGTCAGACAG70.12081463583016915No Hit
ATTCTCGTGAGAGGGGAGGACAGCAGAGGGAGTCAGGGGAGGGAGACTGG70.12081463583016915No Hit
GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT70.12081463583016915No Hit
GTACATGGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGG70.12081463583016915No Hit
TCTCAGGAGACCGCGTATTCTTAGATTCAGCCGCCGAAGCCATACAGAGT70.12081463583016915No Hit
ACTTTGGGGTGAGCCCCACAGGAATAAAAAACACTGGGAAGGGGTAACCC60.10355540214014498No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG60.10355540214014498No Hit
GTATCAACGCAGAGTACATGGGAAGCTGCAGGCTCCCTGCCCATAAAACA60.10355540214014498No Hit
GTACATGGGAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTACCTATTCG60.10355540214014498No Hit
GTACATGGGAATCTCGAGGATTCCACTGGGAAATTACCTTTAAAAAAAAA60.10355540214014498No Hit
GTATAGGTGACGGCGTCTCGAATAACGTTCTCTAAGAAAACCTTAAGCAC60.10355540214014498No Hit
CATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGA60.10355540214014498No Hit
GTATCAACGCAGAGTACATGGGAGTGGTGCTGGGAGTGTCGTGGACGCCG60.10355540214014498No Hit
GTACATGGGACAGTCCTCCACTTCCTGGGGAGGTAGCTGCAGAATAAAAC60.10355540214014498No Hit
GTACATGGGAGGTTGGAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAG60.10355540214014498No Hit
ATAGCGCACAGCGCGCCTTAGCAGCAGCAGCAGCAGCAGCAGCAGCATCG60.10355540214014498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)