FastQCFastQC Report
Tue 10 May 2022
EGAF00003659311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27533
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAGTGCATTAAAAAAGAAGCCACTGAAGACAGGCTTAAGCAT550.1997602876548142No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG480.1743362510442015No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT480.1743362510442015No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA480.1743362510442015No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT470.17070424581411398No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA420.15254421966367632No Hit
GTGTTGGAAATGTCATGACAATGCAGTGCTGCACAGCAGCAAAACTCAAT380.13801619874332618No Hit
ATATTGAGGAGTGCCTCAGCAGCCTCAATAGTTTCAATTGTTTCATCCCC360.13075218828315113No Hit
AACTTAGAGTGTGCAGAGACACACACACCATTGGTTCAGTTCAAACATTT350.1271201830530636No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG340.12348817782297608No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT330.11985617259288853No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA310.11259216213271347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)