FastQCFastQC Report
Tue 10 May 2022
EGAF00003659665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5056
Sequences flagged as poor quality0
Sequence length140
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC110.2175632911392405No Hit
GCCTCGTGGACCACCAGCAGCCGGCCGGTGCGCGCGCACGACGACAGCAC80.15822784810126583No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG70.13844936708860758No Hit
GCATAATCCTCATTTGAAGAATCAATTAAATGCAGAATTAAATCCGCTTC70.13844936708860758No Hit
CCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAAGGACATGG60.11867088607594937No Hit
ATGCTGAATATATGCCTTATTTTGATTTATCCTCACAACTCAGTTCTCCT60.11867088607594937No Hit
ACCACGGGCTGCTGCGCTCCGCCCTGCAGTGCGGCGACCCGGTGGTCTAC60.11867088607594937No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA60.11867088607594937No Hit
GTGCGGCATGGACGAGCTGGTGAACCAGGCCGCCAAGAACCGCTTCATGT60.11867088607594937No Hit
GTCCTGCCCGGTGCCATCGGCGACCAGCGTGCCGCCGAAGGGGTCAAGGC60.11867088607594937No Hit
GAGGGCTACCTGAACGCGGCCGTGCTCGCCGAAGGCATGCGCCGCGCGGG60.11867088607594937No Hit
GAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGG60.11867088607594937No Hit
GCTTCAAATTGCGCTTGTCGGCTATACAAACGCAGGGAAATCAACATGGT60.11867088607594937No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG60.11867088607594937No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG60.11867088607594937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)