FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003659700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2887
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT80.27710426047800485No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC70.24246622791825423No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA60.20782819535850364No Hit
ATTTAGTGGAGCTGGGGAAGGAAGAAAGTGGGGTTGGGAGAACCTCCCCA60.20782819535850364No Hit
GTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCTTCTCC60.20782819535850364No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.20782819535850364No Hit
GTCCACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGC50.17319016279875304No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA50.17319016279875304No Hit
TGCCTGGACAGTGGCCCTGCAAGCAGCCAAGGATGGGGTCTCCACCACCT50.17319016279875304No Hit
CCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGA50.17319016279875304No Hit
CCCCAACCCCATCCCTGCTGGCCCGGGGACGGGCATCGGCTCTCAGCAAG50.17319016279875304No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA50.17319016279875304No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC50.17319016279875304No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG50.17319016279875304No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT40.13855213023900242No Hit
GATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAG40.13855213023900242No Hit
GTACATGGGCCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCT40.13855213023900242No Hit
AGCACACCCTGAGCAAGAAGGAGCTGAAGGAGCTGATCCAGAAGGAGCTC40.13855213023900242No Hit
CGCATCCCACTCAGTGAAATGACCCGCGAAGAGATCAATGCGCTAGTGCA40.13855213023900242No Hit
GCCTCACACCGTCCACGGGCTGGGCCTCGATCAGAAGGACTTGGGCCCCC40.13855213023900242No Hit
CTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAC40.13855213023900242No Hit
TAACTGAGTTATTTTTTTCATCAATCAGGAAAATGCTTCCTTAATCAATG40.13855213023900242No Hit
CCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTAG40.13855213023900242No Hit
CCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGCTT40.13855213023900242No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA40.13855213023900242Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTGAAGTA40.13855213023900242No Hit
GTACATTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAA40.13855213023900242No Hit
CTTTATGTCTTTATCATATTTCATTTTCATTACTTTTAGGGCTCGGTGAA40.13855213023900242No Hit
TCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAAGCTGAAAGTCCCC40.13855213023900242No Hit
GTACATGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGC40.13855213023900242No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT40.13855213023900242No Hit
TTTTCCTAGTGTCCAAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTT40.13855213023900242No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG40.13855213023900242No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA40.13855213023900242No Hit
ACCCAGCATGGTTTGTTCTAATGCTTCTTGTTGGCAGCTGCCACCTGTCC40.13855213023900242No Hit
CGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATAAGAGGCACAAAAG30.10391409767925182No Hit
GTATCAACGCAGAGTACATGGGAAACGGAGCTGCGGAGGAGCGGGTCCCG30.10391409767925182No Hit
AAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCAC30.10391409767925182No Hit
AAGTTAAACAGCTAAAAGAAGTAAAATAAGAAGGCAATGCTTGTGGAATG30.10391409767925182No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGA30.10391409767925182No Hit
TTTCATGAATGCGATTTCTGATATGGCGGCGGTCGGTTTCCAGTTTCGTT30.10391409767925182No Hit
TAACCCAGCTTGTCAATGGGAGAGGTGTGACCATCCAGCCACTTAAAAGG30.10391409767925182No Hit
CCATAGATCTTGGTCATGGAGCCAACCCCAGCGCCACCCCGGAGGTACAG30.10391409767925182No Hit
CTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGG30.10391409767925182No Hit
ACCAGATGCAGTGGCTCAGGCCTGTAATCCCAGCACTTTCAGAGGCCAAG30.10391409767925182No Hit
ACATGATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTG30.10391409767925182No Hit
TTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGTTTAACTTTG30.10391409767925182No Hit
CCTCTTTGCATCTTACAAAGTTAAACAGCTAAAAGAAGTAAAATAAGAAG30.10391409767925182No Hit
GTTGAAAGGCTCGATGTGACACTGGGTCCGGTACCGGAGATCGGTGGATC30.10391409767925182No Hit
TCACCACCACGACCGAGCGGGAAATCGTGCGTGACATTAAGGAGAAGCTG30.10391409767925182No Hit
GCCATGGCCCTACGCTACCCTATGGCCGTGGGCCTCAACAAGGGCCACAA30.10391409767925182No Hit
TCATGGGCGTGTGCTTGTTGATTCCAGGACTGGCTACTGCGTACATCCAC30.10391409767925182No Hit
CTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGG30.10391409767925182No Hit
ATGTAACTGGAAGATTTTAGCTAAAGTTCTTTCAGTCATCTTTGTCTTTG30.10391409767925182No Hit
CCCCACTTCTTCCACCCCACTTCTTCCTTCACCAACATGCAAGTTCTTTC30.10391409767925182No Hit
AGCGGCTACAGTGTTCTTCTTTCAGATACAGTAGGATTTATTCAGGATCT30.10391409767925182No Hit
AGCCGCGGCTGCCCTTGCGCTTCCCGAGCTGGCGGGGTCCGTGGTGCGGG30.10391409767925182No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT30.10391409767925182No Hit
CTCCTAGGCAGTCCTGGGCCCCAGAGGGCAAACAGCATGCTCCAGAGATG30.10391409767925182No Hit
GTATTATTAAAAACATATGGATCCCCATGAAGCCCTACTACACCAAAGTT30.10391409767925182No Hit
GTGCCCGGCGCAAGCGGGGCTGCTAGCCTCGGCTTCATGTCCAGACCCCA30.10391409767925182No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA30.10391409767925182No Hit
GCGAATAACCGCCTAGCAGTCTTCGACATAGTTCGGTAATTTTTCTCTGC30.10391409767925182No Hit
CGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGT30.10391409767925182No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG30.10391409767925182No Hit
ATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGAC30.10391409767925182No Hit
GGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCTG30.10391409767925182No Hit
AGCTAAGGCTGCGTTGGGGTGAGGCCCTCACTTCATCCGGCGACTAGCAC30.10391409767925182No Hit
ATTTTACTTCTTTTAGCTGTTTAACTTTGTAAGATGCAAAGAGGTTGGAT30.10391409767925182No Hit
CAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGAT30.10391409767925182No Hit
CCCCATCTAACACGGCTTGCTGAAATTTACAGGCAGACTGACGTTTTCTT30.10391409767925182No Hit
GCCCAAGCTCTGGGCCCGCTACGCATTTGGCCAAGAGACGAATGTCCCTT30.10391409767925182No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT30.10391409767925182No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG30.10391409767925182No Hit
GGGGTGGGGGGACAGCTCGAGGCCGAAATGCGGAAACAAGAATATTTGTG30.10391409767925182No Hit
GACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCGCTTTTCCTCCGCAA30.10391409767925182No Hit
CCTCTCTCCCTGCTTCAGGCGGAAGAGCTGGAGCACGAAGATGAAGAAGG30.10391409767925182No Hit
ATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGC30.10391409767925182No Hit
CCTGGGATCACGTCGGATGAGGGAGGCGGCCGGGCCCTGCAGGGTGCAGC30.10391409767925182No Hit
ACGTTTTCCACAAGTTCTCCGCGTTCATCAAGAACCCGGTGCCCGCGCAG30.10391409767925182No Hit
CTGCTTTCTGGCCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCC30.10391409767925182No Hit
CTCTTGGAGCCTCGGCTGAAGTGGCTGGGCATGACGCCGTTTCTCTGACG30.10391409767925182No Hit
GTTCTAATGCTTCTTGTTGGCAGCTGCCACCTGTCCGGCGATTCTGTCCA30.10391409767925182No Hit
GTATCAACGCAGAGTACATGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGG30.10391409767925182No Hit
GCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGG30.10391409767925182No Hit
CTCCTGTGGCCCGGAGTTTGATGTGTAGGGCGGTGATACCCAGCTCCTTG30.10391409767925182No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA30.10391409767925182No Hit
GAGTAGTAGTGTGGATGTTGTTGTTAGACACTTCTTTTTGTCTTTAAATA30.10391409767925182No Hit
CTGGCATGCGAAGGCATCGAGGCCGCCCACAAGGCGCTGCCCGCCGGTCG30.10391409767925182No Hit
CTCACAGCCAATAACTTCAACAACTTCCCTATCTTTAATCCTCTCACTCC30.10391409767925182No Hit
TGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCG30.10391409767925182No Hit
GTCCTCAGCCCGCGCGCCGCCATCGCCGTCATGCTGGGCGCCGCTCTCCG30.10391409767925182No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG30.10391409767925182No Hit
TCCTCAGCCTGCTGCTGTTCGGCTTCACCCTAGTCTCAGGCACAGGAGCA30.10391409767925182No Hit
GGCATCGGCTCTCAGCAAGAGAAGTATTCCCGGGATGCTGAGCGCTTCAT30.10391409767925182No Hit
ACTGTGCTCTCCGGCTCCATGGGACACAAAGATGAGGGCCTTGGGTGTGC30.10391409767925182No Hit
GTCATATTCCGGCGCCTCATCATTTGGTTACAGTAGGTGGAGCTGCTGCT30.10391409767925182No Hit
CCTCGACATCGCCGATCGCCCCGTGCGCCTCGGCGGCGAGGTTCGGGTGG30.10391409767925182No Hit
GTACATGGGAGTCTCGCGCCTGCAGCCCGTGCCGCCCCAGCCGCTGCCGC30.10391409767925182No Hit
TCTTGCTTTCTATGCTGTTTGTAGTGAAATAATAGAATGAGCACCCATTC30.10391409767925182No Hit
CACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGT30.10391409767925182No Hit
GGAGACCGGGAGCTTGCGCCCGATGCAATGGCTGACTGGGTTGCGAGTTG30.10391409767925182No Hit
TACAAGTGTACAGTGACGTTCCACGCTCCCCATCTAACACGGCTTGCTGA30.10391409767925182No Hit
GTATCAACGCAGAGTACATGGGCAGACGCCCGTCGAACAGGCGCACATCG30.10391409767925182No Hit
GGGTTTGCTGAAGATGACGGTATATAGGCTGAGCAAGGGGTGGTGAGGTT30.10391409767925182No Hit
GGTGTACTTCGCCGAGAGGGTGACCTCTCTGGGCAAGGACTGGCATCGGC30.10391409767925182No Hit
GCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTC30.10391409767925182No Hit
GTACATGGGAGGTGCAGCTGCCCTTCGTCATGGGCGTGCTGGCGGACCTC30.10391409767925182No Hit
AATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATT30.10391409767925182No Hit
GTGTCGGCCAGACTCGCGCGCGCGGCCGGCGGCACGGCCGGCTGGGCCGA30.10391409767925182No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC30.10391409767925182Clontech Universal Primer Mix Long (96% over 26bp)
GTCCGATTGGGGGGGGGTCCCTTCAGTGCCACAGGCCGGTGGCATCGGCG30.10391409767925182No Hit
CATCTGTTTTTAAGAGGGAAATCTGAGTTTTCAAGGAAAGCCCAATACAG30.10391409767925182No Hit
TGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAA30.10391409767925182No Hit
GTCCAGTCGCTATCGGAGTAGCCGCGCTGGTGCCACACGACTACAACCCT30.10391409767925182No Hit
GAAACGCCTTTGCTTGCTTTGATGAAGAAGCAACAGGCACCATTCAGGAA30.10391409767925182No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.10391409767925182No Hit
GACAAACCCGATATGGCTGAGATCGAGAAATTCGATAAGTCGAAACTGAA30.10391409767925182No Hit
GCCATGGCAAGCAAGGGCTTGCAGGACCTGAAGCAACAGGTGGAGGGGAC30.10391409767925182No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.10391409767925182No Hit

[OK]Adapter Content

Adapter graph