FastQCFastQC Report
Tue 10 May 2022
EGAF00003659743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258067
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC3430.13291122072950048No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG3130.12128633261904855No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA2990.11586138483417098No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA2770.10733646688650621No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT2730.10578648180511263No Hit
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG2700.10462399299406744No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT2610.10113652656093186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)