FastQCFastQC Report
Tue 10 May 2022
EGAF00003659744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258067
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC3280.12709877667427452No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA3000.11624888110451936No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT2940.11392390348242898No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA2710.10501148926441582No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG2650.10268651164232544No Hit
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG2640.10229901537197705No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT2590.10036153402023505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)