FastQCFastQC Report
Fri 10 May 2024
EGAF00003659751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166
Total Bases23.2 kbp
Sequences flagged as poor quality0
Sequence length140
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTTCTCCTCCAGCTTCAGGGCTTCTCTGCACTTGATGGGGCTGATGAA21.2048192771084338No Hit
CCCGGTGCCCGACGTGTTCCCACTGCCGCCGCCACCACCGCCGCTCCCGA21.2048192771084338No Hit
ACAGGATGGATTTAACCCACAAGCTATATAGTTGGCTAACCCCTGGCCTT21.2048192771084338No Hit
GACTAGAACAGACATGGACAGAAAAAATAATAAACACTACGCTCATCTGA21.2048192771084338No Hit
GGGAAAGGGCGGTCTCTTCAATAAATGTTGCTGAGAAAACTAGATATCCA21.2048192771084338No Hit
CCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTC21.2048192771084338No Hit
GTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAA21.2048192771084338No Hit
GTTTTCGGGATCATGTGGATTTTTGACATTGTCAATGCTTTCTGGAATAT21.2048192771084338No Hit
GGTGGAGTATGTGTGTGTGTCAGTGCTCAGCTAAGAACTGTAGGGAAGAT21.2048192771084338No Hit
CTTCTTATCCTAGTTTTACCTCTCTCTGAAGACAGGTAATGATTAGCTGC21.2048192771084338No Hit
GGTGATAGAGATCAACCCATACCTGCTAGGCACCATGGCTGGGGGCGCAG21.2048192771084338No Hit
TGCAAATGAAGACATATTCTCTTTCATTGTTTTGCAATTTTTTCCCTCTT21.2048192771084338No Hit
GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG21.2048192771084338Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAGGAGTTTGAGACTAGCCTGAGCAACATAGCAAGAAATATGTCTCTCTC21.2048192771084338No Hit
GACATGTGCAGCTCATCATCTGGCCATTTTCTCCCTGACGGTCCCACTTC21.2048192771084338No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA21.2048192771084338Clontech Universal Primer Mix Long (96% over 26bp)
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC21.2048192771084338Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC21.2048192771084338Clontech SMART CDS Primer II A (96% over 26bp)
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC21.2048192771084338Clontech Universal Primer Mix Long (96% over 26bp)
GGAGAAGAAGCCTGCTGCATAAACTCTTAAATTTGATTATTCCATAAAGG21.2048192771084338No Hit
AACCAAAACAGAGAGAGATAAATCTGTGCAGAAAACATCAAATCTATGGC21.2048192771084338No Hit
CTTTGTGCTGGCGCCATCGACGTTGCTGAGATGTATCCACTGACGTACGC21.2048192771084338No Hit
CGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC21.2048192771084338No Hit
CCTTTGTTTGGTGTGCTCTCCTGGCTGGACAGCTTATTTAGTAGCACCCT21.2048192771084338No Hit
ACTGTAATTCATAGAAGGGATTTTTTCCTTTCAAATCTTAGATGAAGCAG21.2048192771084338No Hit
CCCAAAGTGCTGGAATTACAGGCATGAGCACCCAGCTGAATTGAATTTTT21.2048192771084338No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTAACCAATG10.6024096385542169No Hit
AAACCCACACAGGACAACCCAACTTCCACAGAGTCCAGAAGAGCATCTTC10.6024096385542169No Hit
CTGCTGGACTCTCCTAGGACTTTGTATTGTCTCCTGGTAGGGGGAAAACC10.6024096385542169No Hit
GTGCCATGGGCTTCACTGCGGCGAGAATCGCCTCGTCCTCCATAGCAGCC10.6024096385542169No Hit
GAGTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGG10.6024096385542169No Hit
CTTCCATCTTGGCCTCCCCAAGTGCTGGGATTATAGACGTGACATTTATT10.6024096385542169No Hit
CCCTGTTGCTTATTTTTGTCAGCCTTGTCAAAGATCAGATGTTTATAGGA10.6024096385542169No Hit
CTATTCTAAAAAAAAGCGGGGTGGGGGGGAGGGAAATTATTCCCTAGCTT10.6024096385542169No Hit
CCCTAATATCAGCTGTTCAAAACTCATTTGATAGGTAAGTAAATGAATTT10.6024096385542169No Hit
ACCCTAGAGTTTACAAAGGCAAGAAACCTGTTCTTCTCATTGATGACTGG10.6024096385542169No Hit
CACCACAGGCCTGAAAGCGCTTGAAACGTCCGCTTGCAGATACTACAGAA10.6024096385542169No Hit
GTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATG10.6024096385542169No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGG10.6024096385542169No Hit
GTTTTTATGTGAAGCTATTCCCATTTCCAACGAAGGCGACAAAGCAGTCC10.6024096385542169No Hit
CTTCTGTTCCTTATGATATTCTCATTATTTCATCATGACTGAAAGAAGAC10.6024096385542169No Hit
AGATGAAGGGGGCTATCTGAGAAGAATGAGAACAGCTTCAGGACCTGAGG10.6024096385542169No Hit
CTCTGGAGGTGCCACCCATGAGAACAAAGAGCTCTGGAGAGATGTGGATT10.6024096385542169No Hit
CCCGAAGAGCGCTCAGTGAGTGACCGCGACTTTTCAAAGCCGGGTAGCGC10.6024096385542169No Hit
GGACAGCCTGGTGCAGTACACCAAGGTGGGAGAGAGGCAGGGAGGGGTCT10.6024096385542169No Hit
AAACTGAAGGCAATATTATTTGCTTTTTTATCAAAAAAGAAAAAAATGCA10.6024096385542169No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTA10.6024096385542169No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GGGAAGCCCCAGGCTGAGCGGAAGGAGGAGAAAAAGGCGGCTGCCCCTGC10.6024096385542169No Hit
GTCCAGTTCCTAATCAGATTCAACAGATGTAAAATGATGGTCAAATTGCT10.6024096385542169No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
TTGCAAATATTAGCTTCTCCGGCCGTTTCTCCTCATCAGCCACTTTCACA10.6024096385542169No Hit
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GACCAGCGTCACACAAAAACGGAACAGGGCTGACGCCGCTACATATATAG10.6024096385542169No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAACAAAG10.6024096385542169No Hit
GACAAAATGAGTCGACAAATCCCCAAAAATGGCAAATTAAGCCCTGTGAC10.6024096385542169No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT10.6024096385542169No Hit
ATTTTTCTCAGGTTATGTTATTTTCAGCCAGAAACTTTATCAGACAAGTT10.6024096385542169No Hit
CACTTTGGGAGGCCAAGGCGGGCGGATCACCTGAGGTCGGGAGTTTGAGA10.6024096385542169No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCC10.6024096385542169No Hit
TCCATGGATCAGAGATGTGGAACCCAAACACTGACCTCAGTGAAGCCTGG10.6024096385542169No Hit
GGGCGGCGTGGCCCCCACCGAGAGCTGGGGCGCCTAGGGCCCGGAGCTGT10.6024096385542169No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGGATCAAAGCAGAGT10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 22bp)
TTCTTTCTTAAGCCCTTTGCTCTGGAGGAAGTTCTCCAGCTTCAGCTCAA10.6024096385542169No Hit
GTCCTCTACATAAGTGTTTGGGAGTTACTTATGTTTATATGAAATGAAGC10.6024096385542169No Hit
CTTCCAACCTCTATGGTCTAAGACGGCCTTCCCCACTCCAGCACTGCCTC10.6024096385542169No Hit
GGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAG10.6024096385542169No Hit
CAGAAATACCACTTAGCTTTTATGATGGTCACAAATGTGGCCAAAATGAC10.6024096385542169No Hit
GATCAGTAGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGAGTC10.6024096385542169No Hit
ATATCAGACTTCTTCAAATCAGAATCTTCCAACACTTTCTGGACGGGCTT10.6024096385542169No Hit
GCTATGAAACAAGGGAAGCTAATGCCAGCAACTGTCTTTGAAGAGGTTTC10.6024096385542169No Hit
AATGTATTTATTTTTTCTTTAGAATTTGGCTCAGAACAGTAACAAAAATA10.6024096385542169No Hit
TCTTGATACTAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTTGA10.6024096385542169No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCAGCGAAGAAAC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GGCCCGGCCTCATCAACGTGTCAACATGGGGATGGAGCTGCTAAGTGAGG10.6024096385542169No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA10.6024096385542169No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAACATGGCATTGGTGTAGTTCTTGGCATGGCGAACAACAATTTCAAAGG10.6024096385542169No Hit
GTCCCAGTCTCTGAATCCTGGCATTGGTCGACGGGATCACACTTCCACCT10.6024096385542169No Hit
ATGCATTATTGGGCCTTGCCTGTGGACTCAAGTAAGGTTCAAAATCATCA10.6024096385542169No Hit
ATGGCTCCCTGGTAAGCAAGATTATGCTATAATCTTAAAATAGGCTCACA10.6024096385542169No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6024096385542169Clontech SMART CDS Primer II A (100% over 26bp)
GGGAGGCCAAGGTGGGCGGATCACCTGAGGTCAGTAGTTTAAGACCAACC10.6024096385542169No Hit
ATTCAGGCTCATCAGCATACCAGGGCAGAGTTAGGGTGCTCTAATCCCTG10.6024096385542169No Hit
GGGTTTCACTGTGTTGACCAGGATGGTCTCAATCTGCGGTGGCTCACGCC10.6024096385542169No Hit
ATTCCCAGGTCTACCCTAATTGAATGGTCCCTCTCTATCTGCTCAAGCAG10.6024096385542169No Hit
GAAATAACTAACATCAGAGCAGAACTGAAGGAGATAGAGACACAAAAAAC10.6024096385542169No Hit
ATCTGGAAGTGGACCTTTGGAGCGCTCTGAGGCCTATGGTGAAAAAGGAA10.6024096385542169No Hit
GCATATGGTTGGCCAAAAAATATACCCTGATAACATAAAAAAAAAGCAAC10.6024096385542169No Hit
TTTCAATTGTGATGTTAGGGTGTCAATTTTAGATCTTTCCTGCTTTCTCT10.6024096385542169No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT10.6024096385542169No Hit
GTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTGG10.6024096385542169No Hit
ATATTGGACCCTTTTGACTTTCCAGTCCTGTGACTTTCTACTTTTAGTAG10.6024096385542169No Hit
ATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGG10.6024096385542169No Hit
ATCCTGCTGTATTTTGAATTGAAATTGTGTTGGATCTATAGATCGGTTTG10.6024096385542169No Hit
GGTAAGTGCAAAACACAACAGCACCATGATAGTTGCAATCAAACGAGTAG10.6024096385542169No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.6024096385542169Clontech Universal Primer Mix Long (100% over 23bp)
CGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGG10.6024096385542169No Hit
GGGGAAATTAATTGAGTTTGGAGAGACAGAGCAGATATTCCTAAATCCAC10.6024096385542169No Hit
ACCTCAGACTCCGAAAGTGCTAGGATTACAGGCATGAGCCACCGCGCCCA10.6024096385542169No Hit
ACGCAGAGTACATGGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG10.6024096385542169Clontech Universal Primer Mix Long (96% over 27bp)
TGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAG10.6024096385542169No Hit
CTCTTTCTCTGCCTGCCTGTCTGTCTGTCTGTCTGTCTCTCTCTGTCTCT10.6024096385542169No Hit
AGATAAAACCACAAAGATGGGGAGAAACCAGAACAGAAAAGCAGAAAATT10.6024096385542169No Hit
GTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGC10.6024096385542169No Hit
ACTTTTCTGTGTGTGAGAGAAAAGAGGTGCTAATTATAGGCAGGAACAGC10.6024096385542169No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT10.6024096385542169No Hit
ACCCATACCTGCTAGGCACCATGGCTGGGGGCGCAGCGGATTGCAGCTTC10.6024096385542169No Hit
GTGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATG10.6024096385542169No Hit
ATGCAATGGAATGGAATCGAACGGAATGAAGTGGAAGGGAATGGAGAGGA10.6024096385542169No Hit
GTAGCTGGAAGGCACATCCTAGAATGGAAATGGAATTGTTGTGGGTTAGG10.6024096385542169No Hit
GCTACATATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGA10.6024096385542169No Hit
GTACATGGGAAACAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6024096385542169Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GAAGCGCACTGTCTTGCTCAGAGGCCGGCACTCGCCCACTGTGACGATGT10.6024096385542169No Hit
CGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGC10.6024096385542169No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
CCACCACGCCTGGCTAATTTTTTTATTGTGTGAGAGTCGGGGGTTCACCA10.6024096385542169No Hit
GAAAAGAAAAGTGCTCCTGAGTCCAGAATCTCCAGGAGCCCTGAGGAAAG10.6024096385542169No Hit
GAGTTGGGCATGGTGACTCACTCCTGTAATCCCAGCTACCTGGGAGGGTG10.6024096385542169No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTGCGTTTATACCACTGCATCCC10.6024096385542169No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTC10.6024096385542169No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
CTACACTGACTGGCTCAGCGTGGGGCGTCCCGGCGCCCGGCGGGGCGGGG10.6024096385542169No Hit
AACTAAATCATTGGGAGTTACTTGCCAACTTGGAAGTTGATATTTCTTTA10.6024096385542169No Hit
ACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA10.6024096385542169No Hit
GTTTTGATTATTTTAAGTGCTTTTTCAAACTCCAGAGAGAGATGAGAGGA10.6024096385542169No Hit
ACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCCTTTTAAA10.6024096385542169No Hit
GGGCCGTGGGCCGACCCCGGCGGGGCCGATCCGAGGGCCTCACTAAACCA10.6024096385542169No Hit
CAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACATTGCATTAGTCAGTAGCTGGACTTTTTGCAAACTGGCTCTGACAGTC10.6024096385542169No Hit
CTACACTGACTGGCTCAGCGTGTGGCTACCCGACGGCGGCCGGGGCGGGG10.6024096385542169No Hit
GGGGTAGGAGTGCTCTACCAAGGGAAGCTCCCACATTGTCTTCTCCCATC10.6024096385542169No Hit
CCACATTCTGCATGTTCTTAAAACCAACCTGGTTGTCAAGCAGGGGCTGT10.6024096385542169No Hit
GTCCATCAAGGTCACTTTAGATCCTCTAAAGAGCTGGAGTCAAAAGATTT10.6024096385542169No Hit
ACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCACGATCAAGTTGGC10.6024096385542169No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10.6024096385542169No Hit
TGTCAATATGGTGTATGACTTGGCTGCAGCTCATTCTGAAGTACCATAGT10.6024096385542169No Hit

[WARN]Adapter Content

Adapter graph