FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003659752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166
Sequences flagged as poor quality0
Sequence length140
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGAGCTAACCAGCCCAGGAATTTCTTTTGTCACCCTGGACACACGTG21.2048192771084338No Hit
CAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCC21.2048192771084338No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG21.2048192771084338Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTCCCGCACGTGGTAGAGGTTGACTGCACCTCCTGAGTAGGCATCTCTG21.2048192771084338No Hit
TTACTCAACTCTGCCGCTGTAGCACAAAAACAGTCATAGTACATAAACGA21.2048192771084338No Hit
CTGCTAAGTACGGTGCACTTTACATGCCTTAGCTCATTTAATTCACAGAA21.2048192771084338No Hit
TGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA21.2048192771084338No Hit
GTATGGAGATGTGGGAGTCCCAGGGCGACCCGAGGCGGAGGGGCAGGGAA21.2048192771084338No Hit
GGCAAGTTTTGTTATTAAAATTGTGTATACTGTAAAAAGTGAATGCCTTC21.2048192771084338No Hit
TTCTCTCGCCTCAGCCTCCAGAGTAGCCGGGAATACAGGCACCCACCACC21.2048192771084338No Hit
CGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCA21.2048192771084338No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA21.2048192771084338Clontech Universal Primer Mix Long (96% over 25bp)
TCCATTTCCTCAATTAGTGGATTTTAATTTTTAAATGGAATTAAAATGTC21.2048192771084338No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC21.2048192771084338Clontech SMART CDS Primer II A (96% over 26bp)
ATATATTTGTTGAACTTAGAAGTCTTCCAGTTCAAATCCTTTATGTTAAA21.2048192771084338No Hit
GATGACGGGTCAGAAGTCGTCACGCCCGTCGTCACGAAGGGTGGTCGCCA21.2048192771084338No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC21.2048192771084338No Hit
ACATCAGTTGTTAGGAAAATTTTAAAACCCAATACATAGATTATATATTG21.2048192771084338No Hit
AGGAAACAATGCAGACGCCTTTGGACTTCAAGAGAAAGCCCATCAGGAAT21.2048192771084338No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.2048192771084338Clontech Universal Primer Mix Long (96% over 26bp)
GTTCAGCTGTCCAATGACTTTGACGAGTACATCATGGCCATTGAGCAGAC21.2048192771084338No Hit
AGCTCCGGGTGGATAAGGCAGCTGCTGCAGCAGCGGCACTACAAGCCAAA21.2048192771084338No Hit
CACAGAAGCCAGCTCCAAGCCAAAAGCCCTGATGGCGTATTTTATGGTTC21.2048192771084338No Hit
GGCTTTAAACTGTTGTGCCAGTGCTTAGGCTTTGGAAGTGGTCATTTCAG21.2048192771084338No Hit
TATCAACGCAGAGTACATGGGAGCAGTGGTATCAACGCAGAGTACTTTTT10.6024096385542169Clontech SMART CDS Primer II A (96% over 26bp)
TTTGTGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCTACTTGAT10.6024096385542169No Hit
GTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTAT10.6024096385542169No Hit
CGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGAA10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
ATTTGAGTCCATTCAATTCCATTCCTTTCGTTTCCATTCCATTTGATGCC10.6024096385542169No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTTGTGATGTGTGTATTCAACTAACAGAGATGAACCTTTCTTTTTACAGA10.6024096385542169No Hit
CGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATC10.6024096385542169No Hit
GTGTTTAAAATATTCTCTGACGGTAGTTTGTGTTTCTACAGGATCAGTGG10.6024096385542169No Hit
GATTTCTCTAATATTGGTATGTAACACAGGATAAAGTTATTCTTGTCATT10.6024096385542169No Hit
ACTCTGTGAGTTGAATGCAAACTTCATAAAGAAGTTTCTGAGAATGCTTC10.6024096385542169No Hit
GAACAGGCAATGTGCAGCCCTCATTTATGAGAAAACCCTCAGGAAACTCC10.6024096385542169No Hit
TAACAAAGGTTGTCTCTTCACTGCTGATTGTATCCTCTGCTGATTACAAG10.6024096385542169No Hit
CTTTCCCATGGGACCTGACCTATGATCGGCCCCCGCTCCTAGGCGTGGTG10.6024096385542169No Hit
GGAAAATGACAAGCAAGGTGGAAACAATGTTCAGTCAAGAGCCTGTGTTT10.6024096385542169No Hit
CCCAAAAGGGCAAGAATTATATTAGATTTCATCTTTTGATGTTGGTTTTT10.6024096385542169No Hit
GTTCTTAGCAGGAGAGAGAACGAGGAGTTGTCAGGAAAGCTGTAGGTTAC10.6024096385542169No Hit
CTCTGCAGCGGACCCTCGAAGCTTCTCCGGAAACCTTCCTGCTGACGCCT10.6024096385542169No Hit
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
CAGGTGGCGTCCGGCCGCCGCCGGACGCCACCTGTCACCAAGTCCGCTCC10.6024096385542169No Hit
GAATATTGCAGTGAATATGTGATTCTTTAAGGCTGCAATACAAGCATTCA10.6024096385542169No Hit
CTTGGCACCTTGTCTTTCTGTCTGTTTACCTGTCTCCCTGCCTGCCCATC10.6024096385542169No Hit
GGTATCAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGC10.6024096385542169No Hit
TCACAGTTCTGTAGGCCACAAGTCCAGGATGTCATGGCTGGCTTCCCTGC10.6024096385542169No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTTACAAATTAACAGACAAAACAGTCATTGGATGCAGCGGTTTTCATGGA10.6024096385542169No Hit
GGTCATGCCACTTATTAGCAAGCAACATGTTTTAAATTTTCTTATTTTTT10.6024096385542169No Hit
CGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCGAAGCA10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TGCTTATTGGGAAGTCACATACTGAAGATGACATCATAATTGCAACAAAG10.6024096385542169No Hit
ATAAGAATGCTTGTGATTTTTGCACATTGATTTTGTATCCCGAGGCTTTG10.6024096385542169No Hit
GTGTTATACCCAGGTTCTCAGGGCCTGCTTTTCTAAAACGCTGGGTAACT10.6024096385542169No Hit
GACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGAT10.6024096385542169No Hit
GTCCACAGGAGAAAGCAGGAAAGATCTAAAATCGACACCCTAACATCACA10.6024096385542169No Hit
GGATCTCATTATTTCTTTAAAGAAACATTTATTTTTTTTTTTCATTTGAC10.6024096385542169No Hit
TCTCATGCCTCAACCTCCCAAGTAGCTGGGATTATAGGTGTGCGCCATCA10.6024096385542169No Hit
ATCCATGACCCCATATGCATACACAGAGCCAGAACCTACAGAGAAGGTGA10.6024096385542169No Hit
CTTAACGCTGTGACCAAAGATGGAAGTTCTCTATAGGAAGCCCTATAGCA10.6024096385542169No Hit
ATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACAGACCCATCAG10.6024096385542169No Hit
ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCA10.6024096385542169No Hit
AAGTGAAACACAGTTTTAAAACTTGCTTTGTTTAGAATTCCCACCTCATT10.6024096385542169No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GTATATAACCTTGAATAAGTGCTCTAAATTCATTTACTTACCTATCAAAT10.6024096385542169No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
TTCCTAAACTGTGCATGTGCAAGGGAAACTCTAAGAGGTCCAGACAGGAG10.6024096385542169No Hit
CTCATAACCATGCCGGCCACACAGAAATCCTCAGTGAACATTATTCTTGA10.6024096385542169No Hit
CAGAGAAGGAGAGTAAGACAGAGGACAGACACAGTGAGAGAGACAAGCAG10.6024096385542169No Hit
CTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCG10.6024096385542169No Hit
AAAAATTTTCTTAAAAGCCTTGAAATGAAGAAAGAAAGAAGGGTGGCTCT10.6024096385542169No Hit
CGCCTGCTCCCGAGTGTCAGGGACAAAAGCCTCCGCCTGCTCCCGCAGCC10.6024096385542169No Hit
TTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGG10.6024096385542169No Hit
GATAAAAGGCACATGTCTGTAAGACAGAGGTTTCGAAGATAGTTACAAAA10.6024096385542169No Hit
CCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTT10.6024096385542169No Hit
GAGCTAGTAGAACCTCGCAATGACAGCCGCAATGGCAGACCCAATGGAGC10.6024096385542169No Hit
TGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6024096385542169Clontech Universal Primer Mix Long (95% over 21bp)
ATAGAGGAGTTAATGGTTGAGTTAGCTAAAGATTATACGATTGTTGTTGT10.6024096385542169No Hit
TACCCCAAAATTGTTTTCTCATTCACAGCATTAGCATATTCAGCAAATCC10.6024096385542169No Hit
GATGAGCTGAGAGAAGAAGTCTTCAGACGATCGGTAATAATAAACTTCTC10.6024096385542169No Hit
AACCTGTGCATCCCGTGCATGTACCCCAGAACCAAAAGCAAAAAAAAAAA10.6024096385542169No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT10.6024096385542169No Hit
ATAGAAAAAGAGAGACTCCTCCCTAACTCATTTTATGAGGCCAGCATCTT10.6024096385542169No Hit
CAATGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGTG10.6024096385542169No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.6024096385542169Clontech Universal Primer Mix Long (100% over 23bp)
TAACAGGCATGCACCACCATGCCCAGCTAATTTTGAACTTTTAGTAGAGA10.6024096385542169No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAGCAGTGGTAT10.6024096385542169Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACATGGGAACAGGTGAAAAAGTCCCAATCTGTGGTTGATAATGTAC10.6024096385542169No Hit
GTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGA10.6024096385542169No Hit
AGCGTGGACAAGGCCAGTGGTGCCTGGCACAGAGGGCATGCTCAGGGAAC10.6024096385542169No Hit
CTTCTTCATTATTCTCCAGTCCAGAGATTCTGACTCTCTACTAAAAGTAG10.6024096385542169No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6024096385542169Clontech Universal Primer Mix Long (95% over 22bp)
TAATGTGACTTCTTAAAAGTTTTATTAAAGGGGAGGGGCAAATATTGGCA10.6024096385542169No Hit
GGCAAAGGCTTAGAGGCATGGTGCATTGTGCAGTAGGGCATTACAGGCCA10.6024096385542169No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT10.6024096385542169No Hit
TATCAACGCAGAGTACATGGGGGGAATAATTGCAATCCCCGATCCCCATC10.6024096385542169No Hit
CTTAAAGGCAACCTACACAATGGGAGAAAATTTTTGCAATCTACTCGTCT10.6024096385542169No Hit
CATATAACCACATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTAT10.6024096385542169No Hit
TTTCATAGGTTGTCTCTTCACTGCTGATTGTTTCCTCTGCTGTTTACAAG10.6024096385542169No Hit
CTCCAGCAGCGAAAGAGAGAAGGAATAAAGTAGCATAAGAAGCAAGGGAA10.6024096385542169No Hit
TTAGAGTACTTTGAGGCCTATGGTGGAAAAGGAAATATCTTCACATAAAA10.6024096385542169No Hit
GGCATGGGATGGGAGAAAGCGCCCCTAGATGACTTTTAAATTCTCTTCCA10.6024096385542169No Hit
GCTTGAGGTTGAGTTAGCTGAGTATCGCATCGCCGCAGTGGAAGGCTTTT10.6024096385542169No Hit
CGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATT10.6024096385542169No Hit
GTACCCTATCATCTTACTCTACTATGAAACAGTATAGTAAATGTCTCTCA10.6024096385542169No Hit
GGACATGGGAAATGGCCGCTAATGGATACAAGGTTTCTTTGGGGGGTGAC10.6024096385542169No Hit
GGCCCTGGGGTCCAGGAACCACCAGTGAGCTTCCCGGAGTTGGCAGACTG10.6024096385542169No Hit
CTGCAGCCCTGAACTCCTAGGCTCAAGCAGTCCTCCTGCCTCAGCCTCCC10.6024096385542169No Hit
CATATTAGGAGCACAGACAGCAGGCCAGGCTTGGGAGCAAGGCTGGGCCA10.6024096385542169No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG10.6024096385542169No Hit
CAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA10.6024096385542169No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT10.6024096385542169Clontech Universal Primer Mix Long (96% over 25bp)
GTCATAGAACAGTCCGTCACTTCACGTGAGGTTAGTTTGGGCTGCGCGCA10.6024096385542169No Hit
TCCCAGTACTCTGCGTTGATACCACTGCTTCCCAGTACTCTGCGTTGATA10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GGAAATCTGTGGTCAAATAATTTTTATAATAATTATTTGGAGATAATGTA10.6024096385542169No Hit
GAGTCCAGATTGCAGCTCATGAAGGTCTGAGTGAGTTCTTCAGGGAAGCG10.6024096385542169No Hit
GTTACATATATTTATTCTCATTCTTTGAACCCCAGAATCCACAACCAATT10.6024096385542169No Hit
TCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGAC10.6024096385542169No Hit
GACATGCATTGCCTACTCGCAGCTTCGAGATCAGTGCATTGTTGATGACA10.6024096385542169No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GCTTAAGGCAAGAGTCTCCACCCTCCTCAAAATTTCACTCAACTAGTTAT10.6024096385542169No Hit
GTCTTGTGCCAGTTTTCAAAGGGAATGCTTTCAGTTTTTGCCCATGCAGT10.6024096385542169No Hit
GTTCTCGCCCGCTTTGCAAAAATATCTAATATCAATTGCGTGCGGTCAAT10.6024096385542169No Hit
AAATAAAGATGTTCTTTGAAACCAGTGAGAACAAAGACACAACATACCAG10.6024096385542169No Hit
GGAGCGCAATGGTGCAATCTCAGCTCACCGCAACCTCCGCCTCCCACGTT10.6024096385542169No Hit
CTCCTGGCGCGCACCTCTCGTGTGGAAGATTTAGAACAGCTGAAGCAGCG10.6024096385542169No Hit
GGCTGATTCCTAAAACTCTGCCAGCCCTGCAGTAATCTCCAGGGCCTGGT10.6024096385542169No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
GTATCGGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCAT10.6024096385542169No Hit
GCACTGAAGAGAATCTAGTATGGCCAATGTCACCTTGGTGACAGGATTTC10.6024096385542169No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGT10.6024096385542169No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.6024096385542169Clontech Universal Primer Mix Long (96% over 26bp)
TCATCAAACTGTACAAAAAGAAGACGGGCAAAGATGTCAGGAAAGACAAT10.6024096385542169No Hit
GGAGAAGAATGTGATGCGGCAGAAGGGGCTGAAAACTAAATCCATACAGG10.6024096385542169No Hit
GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCT10.6024096385542169No Hit
GGCCATTGAGAAGCACGCCACTCTGGGATTCTTAGGGAGGCGGTGGGGGT10.6024096385542169No Hit
CTACAATAGGTACTCCGGGGAAAGGACCCCAAGGAGTCAGACCACAAATG10.6024096385542169No Hit
GTACATGGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT10.6024096385542169Clontech Universal Primer Mix Long (96% over 27bp)

[WARN]Adapter Content

Adapter graph