FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003659787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTTAAAGACATCAGTGTGGTTGTTTGTCATGCCATTAAATCCTACATG24.25531914893617No Hit
GGCCAGGTGCGGTGGCTCTCATCTGTAATCCCAGCACTCTGGGAGGCCGA24.25531914893617No Hit
CCCGGGGAGAGGGACTGGCGCAGTTCTCTTCCCTGGAAGTGACAGTGACA24.25531914893617No Hit
GCGCGAGATGGCGGCCGCCGGCAAGCTGGATGCGAGTTATTTGAATTAAA24.25531914893617No Hit
TCCGACCCGGAGCAGGCGCGGCAGTTGCAGGATGGCGGCGTGCAGCGGCG24.25531914893617No Hit
CCCGTCGAGCACCTCGCGGGCCAATTTGTCGTTGATCTTGCCCGCGTCGA24.25531914893617No Hit
TCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAG24.25531914893617No Hit
GTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCG24.25531914893617No Hit
AGAGAGGACTTTTAGAAACCAATAAACAGTCAGGGACTAGAGTAGTATTT12.127659574468085No Hit
AGATAAAAGTTATAACTTCCTACAAGAACACACGAGGGCGCTACAGAGGT12.127659574468085No Hit
GGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAG12.127659574468085No Hit
GATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTT12.127659574468085No Hit
CACCAGACTTGCCCTCCAATGGAACCTCGTTAAAGGATTTAAAGTGGACT12.127659574468085No Hit
GCATATTTCGGGGCATTTTTAAAAACTCTGTCACAATAAGGCTCTAGACA12.127659574468085No Hit
GTCCAGACTGCTGACGGTTCCGGATTCGGTCCGCCCGCCGCTGAACCCGC12.127659574468085No Hit
GCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTG12.127659574468085No Hit
GGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCC12.127659574468085No Hit
TTTGTATCTTTAGTAGAGACCAAGTTTCGTCGTATTGGCCAGGCTGGTCT12.127659574468085No Hit
CATGTCTGTTGGTTACTTGGATATTTTGTTTTGAGAAATGTCTGTTCAAG12.127659574468085No Hit
AACCAAAACAACATGGTACTGGTATAAGAAAAGACACACAGACCAGTGTA12.127659574468085No Hit
CCACAAAGAAGCCAAAAACAGAGTAATTCATGAAGAAATGGAACACAAAC12.127659574468085No Hit
ACCATGTACCCCTTGAAAGACCTCACAGGGGTAAACCAATGGTACAAAAT12.127659574468085No Hit
GAATAGGGCGATCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATC12.127659574468085No Hit
CTGTATCAGTACACATGGTCATTTCTCATTTTGTAATCTTATTAAGAGTC12.127659574468085No Hit
GCAGGGCGCGGCTCTGCGGGCCGCTGAGCGCGGGGCCGTCCCGGTGCACG12.127659574468085No Hit
TTATTTAGCTCCATATGATTCTGTAAAGACTTTTGTGTGCTTTGCGATAC12.127659574468085No Hit
TTTTTATGCCTTGCTATTTTTCAAACAGACTTTGTTGGCTTACCATATAA12.127659574468085No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTGACACAACACGGGAAACCTCA12.127659574468085No Hit
GTCCAGGTGAGTTTCCAATCGCCGCAACGCACCGCCCAGGTCCAACCGCA12.127659574468085No Hit
TTATTTATCTGGGTCTTCTCTCTTTTTTTCTTAGTCAGTCTGGCTAAATG12.127659574468085No Hit
CTGTTGCAGATGACCCACATGTCGATCACGACCCGTCCGCGGCGACTTGC12.127659574468085No Hit
ATGAAAGTAGGCACTAAAGGACCAGGCGATAACTTACACCAAGTTGCACC12.127659574468085No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC12.127659574468085No Hit
CCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAG12.127659574468085No Hit
CCAGAAGAAACCAACTACAAAGCCGTTTCTTATCATGCCTCAGGCCACAG12.127659574468085No Hit
ATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGC12.127659574468085No Hit
AGTCCAAAATTTAAGTGGCTTAAAAGACAAATGAACCTATGTGTCCGTCA12.127659574468085No Hit
GGCTGGAGGCGCTGGCTCTGGCCGCACCGGAGTTTTCGCGGAGTAACTGG12.127659574468085No Hit
TTTTTTTATTTTTCTTTTTTTTTTGTTTTTTTCTTTTTAGATGGAGTCTC12.127659574468085No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)