FastQCFastQC Report
Tue 10 May 2022
EGAF00003659815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540517
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA6440.11914518877297106No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA5910.10933976174662408No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA5740.10619462477590899No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT5630.10415953614779923No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC5530.10230945557679037No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA5490.10156942334838683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)