FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003659887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCATCGACCGGCTGTGTGACCGCATGGTCATCCTGCACAAGGGCCGC315.0No Hit
ACCGAGACCGATGTGTGCCGTGACATCGGGATGGACCCTGACCGACCTTC210.0No Hit
CCTGATAGATCGGATCATCGATGAGATCCTTGCCCTGACGCGATGCCACG210.0No Hit
GTTGCATCCCATCCCGACGACTAGACAGCTCGGATGCAAGACAACGGTAG15.0No Hit
CCTGGTCGCTCACGTCACACCTCTCGGATCCACTACGGGTCTAACCAGAC15.0No Hit
TTCCACACCGATCGTCAGGCGGCGGGACCCATCACACAGCACCTGGATGA15.0No Hit
GTCCCGGGCCACGGGTGCGCTGGGCCGCAGCTCGTCGGCGCGCATGGAGG15.0No Hit
TGATGACGCCGGCTGATTCGGGCGTGCCCGCTCGATGCCGGATCGATTAC15.0No Hit
AACCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCGGGTTG15.0No Hit
GCCAATTCGTGACAGATCGCCATAGTGCGTTCCTGATGACAGATATCGAG15.0No Hit
CCTCGATGCCGAGAGACTGCTTAAGGAAAGCCTTCGCAATCGCTCCCAAT15.0No Hit
TTCTTCCACTCCGATGCGCAGGTACGCTGACCACGTCTTGTTGGTGTCTT15.0No Hit
TCCCGGAAAGACAGGGACATCGTCTGGGACTAGTCCTCGATCGGAGAGAT15.0No Hit
GGGTTCCTGGATCCCACATGGCCCAGGCGAAGACGCGTTTGCGTTGATCG15.0No Hit
GAGAGATATAGAGAGAGATAGAGAGAGATATGGAGGTGTGGGGAGGAGAG15.0No Hit
GGCTAGGTGACGGATTACCTGAAGAGTGAATATGGTGAAGAGGTGCTAAA15.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)