FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003659888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003659888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length140
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATGACTGGGCCGCCTCTCGGTAGATCTCGCCCAGGCTCGGGCGAATG315.0No Hit
GACTGTAGCGGCAGAGAACACCTGGCGTACCGACGAGCGGGGGAGCATCT210.0No Hit
GGATGTATCGTCCTTGTGGCCACTGGTCTTCACACGAAGGTGGCTGAGGA210.0No Hit
GCCCTGGGATGTTCTCCAGGTCCTTTATACCCTGGGTTTTCACCAGAGAG15.0No Hit
GCTCGTGCTCGCCGTCCTGGTCGCCACCGGGTCGGTGGCTCTGTGGCACG15.0No Hit
ATGCGGTCCACGACCGTCGTGGCCTTGGGGATCTCTTCGGCCGCAGCCGT15.0No Hit
GGGACGAGGAGCCCGCATGTCTTTCGAAGCTGACGAGTTGGAGTTGCTTG15.0No Hit
GAGCTGGCCTGAGGTTAGCAGGGTGGTGGGGGGGAGTTGTCTCTGCAGGA15.0No Hit
CCTACCAAGCACCCGAGTCCTGTCAGCACAACTCAGGGTGTCACGGGGAA15.0No Hit
ATCATCGCCGGACGTCCGGTGCTCGTCGTCCGCGAGCAGCCTTGGCCGTT15.0No Hit
GCCCATGCTTGACATGGGCGGTTTGTCATGCCCCCAGACCGGCCGACAGG15.0No Hit
CCGGTAGACTCAACAGCCATGAGCCACACCGACGTGCCGGCCGATCAACG15.0No Hit
GAATGGAATGGAATGGTTTCAACCCGAATGGAATGGAAAGGAATGGAATC15.0No Hit
ATTCCAACAAGATGAGGTAGCAGGCCCTCGACCGAAACGCCGTCGAAGAC15.0No Hit
GTTTGCTGGGGCCGAACGGCGCGGGTAAATCCACCCTACTGAGCGTGCTC15.0No Hit
GGTCGACGGTGGCGCCAGCGACGCCCATCACGATGCCGGCCGTCGAAATG15.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)