FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003660104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003660104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130
Sequences flagged as poor quality0
Sequence length140
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG43.076923076923077Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA32.307692307692308Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTGATGATCAACAATATCGATGGTTTCACCGAGGCTGGCTTTACCTTCC21.5384615384615385No Hit
CTTCCCTTACCTACATTGTTCCAACATGCCAGAGGCTGTTCACCTTGGAG21.5384615384615385No Hit
GTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAATTGTTTCATC21.5384615384615385No Hit
CGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCAGGGCTAGT21.5384615384615385No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG21.5384615384615385Clontech Universal Primer Mix Long (96% over 26bp)
GATGAGAAGATATACCCTCAATGTCCTGGAAGATCTTGGAGATGGTCAGA21.5384615384615385No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG21.5384615384615385No Hit
GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCAC21.5384615384615385No Hit
GTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCTGTACCTGTCTCTT21.5384615384615385No Hit
CCCTATGGCTGAGCTCTCTCTTATGCCCTTTACACCAATCTGTGTCCTGC21.5384615384615385No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG21.5384615384615385Clontech Universal Primer Mix Long (96% over 26bp)
GCGGTAACGCGACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGT21.5384615384615385No Hit
GCCCAGCACATTGCGACGGGTCTGCCCCGCATCAAAGCCCAACCGCTCGC21.5384615384615385No Hit
GATGAATAACATAACATTTAGGTTACCAGGGCCTTTCACAATCTAACCTA21.5384615384615385No Hit
CTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGG21.5384615384615385No Hit
ATATGTGGACCTCTGTGAAGATTTCGTTGGAAACGGGTTCATCTTCACGG21.5384615384615385No Hit
CTTGTCCTCATTCGGCAGGACGCGGTCCATGAACTCCACGATGGTGACGT21.5384615384615385No Hit
GGCTATCTCGTCTCCGCTGCTCGAAGTGTCCATCGACGGCGCTCGCGGCG21.5384615384615385No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGAAGCAGTGG21.5384615384615385Clontech Universal Primer Mix Long (96% over 26bp)
CCCCAGCACCTCGCGCAGGTAGGCCTCGGGATCGAGCCCGTTGAGCTTGG21.5384615384615385No Hit
CATGTACACTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.7692307692307693Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTGCTTGACGGTAATCACCACGTTCTTGAGGATGTCGGAAGCCTGCCATT10.7692307692307693No Hit
TCTTGGACCGGCGCAAGACGGACCATAGCGAAAGCATATGCCAATAATGT10.7692307692307693No Hit
GCTTGAAGAGCTCGCCCGCCAGGTGGCTCAGGCTGCCGTTGCCGATGCTG10.7692307692307693No Hit
CACGCGAGGAACGGTCTCTGGAAGAAGTTGCATAGACCTCAATTCCGGCA10.7692307692307693No Hit
CTGTGACGATGTCACCGATCTGGACGTCCCTGAAGCAGGGGGACAGGTGT10.7692307692307693No Hit
GGTCCCATGATCAGCGAGATCTGCGGGATCACGCCGGATGCGCGCACATT10.7692307692307693No Hit
CACGGCAGGACCATAATGCCCGTGTGCACCAGAACCCTGGGCTGATTGGA10.7692307692307693No Hit
GTGTCCCCTTCCCCGACACCACACAGACCATGGCCCCTCACCGTACACCA10.7692307692307693No Hit
TCTGGGCTTGGGAAGATGCGACAGGGCACTGATAGATCACACATGGCGAG10.7692307692307693No Hit
GCGCAGTGGCTGGTGGCGGGCGGCTCCTGGGGTGCGACGCTCGCGCTGGT10.7692307692307693No Hit
CCACGCCGAACACCACGTTCAACGGCACGGCGATGACCGCCACCAGCAGG10.7692307692307693No Hit
GTGATACTGATGCAGAAGCTAGTAGATTGGTTAAAAGTCTGGACTTCTGT10.7692307692307693No Hit
GTCAGCACAGCAGTCTGAAGTCGATCTGGGATGCTTCACCCAAGTTGAAG10.7692307692307693No Hit
CTCAACACGGGTCATCGGGGCCCGCGGTGAGGTGTATCGAGGCCACCGGG10.7692307692307693No Hit
ACATGGATGAAGCTTGTGAAAATGACACTTTCTTAAAAGAGCAGAAGAGA10.7692307692307693No Hit
ATGCACCAACGCCGCCGGCTTCTATTTCTCTCGCGTCAGCGGTTCGATCG10.7692307692307693No Hit
CTTATGAGCCAATCCAGATCGCAGGGCTCCATATTTTCCAAAATGGGACA10.7692307692307693No Hit
CAGCAGCTCAAGGACGAGACGGAAGAGGTCATCAGGAACCTCGAAGACGA10.7692307692307693No Hit
GCCGCGATCCGCCTCCAGCAGGATGGAGCCGCCGGGGCAAACATATACGA10.7692307692307693No Hit
ATGATAGGAAGAGCCGACATCGAAAGATCAAAAAGCGACGTCGCTATGAA10.7692307692307693No Hit
CGCCAGAGAGGATCCGCCCTCGAATGGACACATTACCAGTGAAGGGGCAT10.7692307692307693No Hit
GCTCGTTCCTGCCCTTGGAGACCAGATAGCGCGGAGACTCGGGGATGAAC10.7692307692307693No Hit
TTGTGGGGCGGCACAGCGGCTGCCGCCTCGGCACCTGGCATCGCTGCTGC10.7692307692307693No Hit
GTTCAGCACCAGCGGGTTGAGCAGCTCTCCGGGCGTTTGCCCAGCTCCAA10.7692307692307693No Hit
GCTGAGCGGCGTGCGGTACGGGGTACTGGCCTTCGGCGATCCCAGCTACG10.7692307692307693No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
CAGCAGGAGTGGGCGTTGCGGCCCAGCCGGCCGCGGTCGTAGGGCTCTTG10.7692307692307693No Hit
GAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG10.7692307692307693No Hit
GTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC10.7692307692307693No Hit
GATATTTCCCCCACACCAATACCTAGATTGAAACCAAGAAGTTTCCATAT10.7692307692307693No Hit
CACCTGTTGTCGCCGCCAAATGCCACGCGTGGGCTAGTGGCACCAGACCA10.7692307692307693No Hit
GCCGCGATGCGCCTCCAGCAGGATGGTGCCGCCGGGGGTTTCATAGACGC10.7692307692307693No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA10.7692307692307693No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCA10.7692307692307693Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTGGAGAGAGGTGATATGCAATTGTAGAAAGTCATATTTCTTGCAATCTT10.7692307692307693No Hit
ATTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCG10.7692307692307693No Hit
CACATACACCCTTCCAAGACTATACCAGGAAGAAGTTGAATCTCTGAATA10.7692307692307693No Hit
GTCTCGGCGGATGACAATGGTCCTCTGCATCTTCATCTTGGTCACCACGC10.7692307692307693No Hit
GTACTACAAGAACATCGGTCTGGGCTTCAAGACACCCAAGGAGGCTATTG10.7692307692307693No Hit
GAGGTTAATGAGCGGCTAAAGGCCAAGGGTGGGGACAAAGGCTAGGGTAT10.7692307692307693No Hit
CCTGTACTCGGGTTGATTCCATTCCATTCCATTCCATTCCTTTCCGTTCC10.7692307692307693No Hit
GTCTGGGGGCGCGGCCTTGAGCGTCGAACCCTACCGCCGTGGGCGGCGAT10.7692307692307693No Hit
GCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAATGGTTTAG10.7692307692307693No Hit
CCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCG10.7692307692307693No Hit
CTGCCCCACTAGAGTAGAATATGCACCATCCCCGCACTCTGACCCTGTCC10.7692307692307693No Hit
GTGATGCATCAGGATGATGACATCGTGACGATCGAGGGTCTTGGCAGCAG10.7692307692307693No Hit
GGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCC10.7692307692307693No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA10.7692307692307693No Hit
ATTCTATTCGATTGCATTCGATAATTCCATTCGATTGCATTCGATAATTC10.7692307692307693No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
CCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCA10.7692307692307693No Hit
GGCTATTCCATCCCAGAACTACCTCGCCGTGATCAAGGTCGTGGGGGTAG10.7692307692307693No Hit
CAGATCGCCTTAGAGAGTTTTGCACATGGTGCGACGCTGTTGGCATCCCA10.7692307692307693No Hit
GGAAGCAGTGGTATCAACGCAGAGTGCTTCCCATGTACTCTGCGTTGATA10.7692307692307693Clontech SMART CDS Primer II A (96% over 26bp)
TTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCAT10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
GACTGCCACGCTTTCGACAAAATCGACGGGAAACGATGGCAAGGCCTCGC10.7692307692307693No Hit
CCGCCACCCAAGGCCATGAATACGCTGACTTGGTACTCAACCAACCGGGC10.7692307692307693No Hit
ATACAAGCATCTCTTGTCTTTCACCCACTTAAATGTAAATGCCACTAATA10.7692307692307693No Hit
GGGTGGGGAGTTGCCCAGTAGCCTCTAGTTCGTTAGTCAAAACGTGAAAA10.7692307692307693No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
CTTCACCGTTCTTGTCCTTGATAGTTCTAAGGGCCTGGATGAGTCTCCAG10.7692307692307693No Hit
GAGCAGCTTAGTCAAGTTGCTCTGGCTCAGGGCCTCTCATGTTGCTGGCC10.7692307692307693No Hit
GGCTCTCTGGCTCTCTAGCTCCAGACAGACGCAGTCTGCAAGCCACCAGC10.7692307692307693No Hit
CAATAACAATAACAATGATTCGTCCACGAACAATGAGTCGAACAACTCAC10.7692307692307693No Hit
GTGTATTGTTTTGTTCCCCTCTCCCCGCCATGCTTATCTTCCATTATAAA10.7692307692307693No Hit
ATTTAGCAAGGTCGTGCTAAGTGTTTTTGGAATATGCAACCATTTCCCAT10.7692307692307693No Hit
GGGGGCCTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGA10.7692307692307693No Hit
GTCCTGCTGGGAGAAACTGGCAAGGAGAAGCTCCCGCGGTACTACAAGAA10.7692307692307693No Hit
GGTGTATGTTCTGTGGATTCACACCTTTTATCAATTCTGGAACATTCTCA10.7692307692307693No Hit
CTACAAATATATTAATGAAACAGCAAAACAGGGCAATCTATGAAGGAGCA10.7692307692307693No Hit
GCGCTACGTGGCCGCCGAGCTGTGGACGCTGGCCAACGCCGCCGAAGCCG10.7692307692307693No Hit
GTCTTGTGCTCCCCCCTCCAGGGCCGACCGCCTCACTAGCTCGCCGTCCT10.7692307692307693No Hit
GCGGTAACGCGACCGAACCCGTAGAATCCGGCGGGAGCCCCGGGGAGAGT10.7692307692307693No Hit
GCCTCTATGGGAGAGACCCCGCAGAGGCTGGCGAAAGAGGCTTCGGTGTC10.7692307692307693No Hit
GGGTGGCGGATGGGAGAGCGACTCCGCTGCGCCGCACCAGTGAGGGCGAA10.7692307692307693No Hit
TTTCGTGGGTGTGTCTTAGTAGCTGTCTCCGGTGTAGTAACACCAATAAC10.7692307692307693No Hit
ACCAAAAGCAGCCGACCATCTTTCAAAACAAGAAGAGGGTCCTGCTGGGA10.7692307692307693No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.7692307692307693Clontech Universal Primer Mix Long (96% over 26bp)
GCCTCGACTTGCATTGTGCCTTGCTTTGTGTTGCCTTGCATTGTGTCTTG10.7692307692307693No Hit
ATTTGTTCCCTTTCCATGTTCTTTCTTCAAGAATCAGCTTTAGCTACCAT10.7692307692307693No Hit
ATGTAATCCTCATCAAATGGAATCAAAAGTAACCATCATCAATTGGTATT10.7692307692307693No Hit

[WARN]Adapter Content

Adapter graph