FastQCFastQC Report
Wed 8 May 2024
EGAF00003660620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003660620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences709729
Total Bases103.6 Mbp
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC14470.20388063613012855No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT11170.15738401558904877No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC10340.1456894110287166No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC7500.1056741375933631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)