FastQCFastQC Report
Tue 10 May 2022
EGAF00003661043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences962062
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTATAGAGCTCACACCCATACTCCCAGCTGGGACCCAGCCTTCCCTG40510.4210747332292514No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG19860.20643160212127698No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG12830.13335938848016032No Hit
TCCTGAGAGTGCCCATCGGCTGAAGTCAAGCATCGGGCTGATCAATGAAA11580.12036646286829747No Hit
GAGTATAAGTTGGTCACCTTTGGTGTAAAACTGAGCTTCCGAGCTGGCTT11320.11766393434103No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT10960.11392197176481349No Hit
GTGTTTATTGATTGCAGAGAGGGATGGTCTATAGAGCTCACACCCATACT10660.1108036696179664No Hit
CTCCAGAAGAATTCATGGTCCTGTTGGACTCTGTGCTTCCTGAGAGTGCC10330.10737353725643463No Hit
CTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTT10210.10612621639769577No Hit
ACTCAGGACACTCCCGAGTTTTTTATAGACCAAGGCCATGCCAAGGTGGC10060.10456706532427223No Hit
CTCTCAGGAAGCACAGAGTCCAACAGGACCATGAATTCTTCTGGAGAGAG9630.10009749891379141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)