FastQCFastQC Report
Tue 10 May 2022
EGAF00003661045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences977773
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTATAGAGCTCACACCCATACTCCCAGCTGGGACCCAGCCTTCCCTG42000.42954755347099993No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG19230.19667141555350784No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGG14190.14512570913698783No Hit
TCCTGAGAGTGCCCATCGGCTGAAGTCAAGCATCGGGCTGATCAATGAAA12520.12804608022516475No Hit
GAGTATAAGTTGGTCACCTTTGGTGTAAAACTGAGCTTCCGAGCTGGCTT12200.12477333696062377No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT10520.1075914348217838No Hit
CTCCAGAAGAATTCATGGTCCTGTTGGACTCTGTGCTTCCTGAGAGTGCC10370.1060573364165302No Hit
CCCATACTCCCAGCTGGGACCCAGCCTTCCCTGATGGCTGCCATCCAAGT10370.1060573364165302No Hit
CTCTCAGGAAGCACAGAGTCCAACAGGACCATGAATTCTTCTGGAGAGAG10300.10534142382741189No Hit
CTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTT10260.10493233091934426No Hit
TCCTAGTGCCATCCCTGCCCAATCTAGTGAAAAACCAGCTGTGTCCCGTG9840.10063685538463427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)