FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003661078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATCCTCGCTCCCAGTCCTTTACTACCTCCTGTTACAATGGCGACAC35.084745762711865No Hit
CTTTTGAACAGGTACCGTTTGATCATCCGCTTTGGGTGCTGTTTTCCTCT35.084745762711865No Hit
TTAGGAGGGTGAGAAATGGCGGCTGAATCCAAAAGAGAAACATTTATCGT35.084745762711865No Hit
GTTCTTAAACCCGCGCTTTGGCAAACGTTTAATCAACGGCATTTGCCCGC23.389830508474576No Hit
CGACAAAGGAGGCTGCTCAACTTCTTGATTTAAGCCCACGTCAAGTTTTC23.389830508474576No Hit
CGGGTAATCGCACGTGAAATCCCTCCAGCATTTTAAGAAGCCGGCTCAAA23.389830508474576No Hit
CCGCCTTCAATCATGTAGCTTGCGAGCGTAAACGGCGCACCGGCAAACCC23.389830508474576No Hit
GGTTTTCCGACATTTGCTTTCAAAATTCGAATGCTGTCGGCATAGTTTTG23.389830508474576No Hit
ACCGTACGACCTCTTCAAAAAAATCACGGCCTGCCAATGCCGGCACCGGA23.389830508474576No Hit
GGTATACTGTACCTGGAACCGTCATATTCCTTTTTTATGTTCGCTCAATG23.389830508474576No Hit
CATTGTTGATGTTTAGATCTGCAAACAATTTCTCAACAAGCGGACGATCG23.389830508474576No Hit
CCCATAGATACGTCGAAGTAGCAGATGTTCCCGGTTGGCATAGCGCAGCT23.389830508474576No Hit
TAGTTTGTGCAGCGGCATTTCTGCCATTTTTGCCTGATGATCCCACAAGG23.389830508474576No Hit
CAGGTTATCGGAAAATGTACGAAAATGAGCAAACGCTTGAAGCTCACAGC11.694915254237288No Hit
GATCAAGAATGTCCCAACCATCGCGGGATTTTTTAAATGCCTGAAAAAAT11.694915254237288No Hit
TATCAAGGCCATGACACCTCAAGCCAAAGGGCGGGTGGAACGGCTTTTTC11.694915254237288No Hit
CATTTCGCGAGTTCCTCGATAAAAACCGCCTCAGTGATAAGGTCCATCCC11.694915254237288No Hit
ACGGGAGGAAGCTCATAAACTTCAAGCCCATCGGGATTCAAATCTTGAAC11.694915254237288No Hit
TGTTAAGGGTCTCTGCATCCGTATATTGGTTGTATTCATTCGTGATCAAG11.694915254237288No Hit
ACCCGGTGCTCGGCCGAGACCGAGATCAATCCGTCCCGGGTACAGGGATT11.694915254237288No Hit
GTCCATACGATGCTGCCGTCCTGTAAGGAAATTATCGTAACGACACCACA11.694915254237288No Hit
CGACCTGTTCGAGCAGGCCAAGTCCAACGCCCCGGCGATCATCTTCGTGG11.694915254237288No Hit
CCCCAGCAGTGCCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTCGAG11.694915254237288No Hit
GTCCTTTTTCATGTCATCAATCCTCTTCCGCTATGTCATCCTGATCCATC11.694915254237288No Hit
ATATGTGACAGTTGTGGAAGAATCGTGGATTTTTATTATCCGGGCCTTGA11.694915254237288No Hit
ACCGGAATTTGGTTAAACCAACGACGAACCGCATGCTTGTCAACGATCTT11.694915254237288No Hit
GTGGATAAGTTTTAGGAGGGAATGCAGTTGAAGGAAAATCGCGAGGCAAT11.694915254237288No Hit
CATATTGTGCCGATACACCGGCCAAATATTTTTGCTCCGCTTCGGGAATC11.694915254237288No Hit
GTTATGTAACTGTCATAACGGTAGAAATTTCGAGGATGAGCTTAGCGGAC11.694915254237288No Hit
GGCCATATTTATCCGGGGCACACAGAAATTCTCGCTGAATTGACCGGCAC11.694915254237288No Hit
TTTCAGTTCAGAGGCAATGATATTTTTCTGTATTTGGCTTGTGACTTCAT11.694915254237288No Hit
CCCATGAACTGAACGATTGGGAAGGAATTTGTGACTCCATTTTGTGGATA11.694915254237288No Hit
GTTATGCAACCGCTCGTCGGGATATACACGGACAAAAAACCTTCTCCGTA11.694915254237288No Hit
GGACATGGTTCATGCCATTTTACATGACAACCAGGATGAAGACAGCGAAA11.694915254237288No Hit
TCCGAAGGAAGGGCCGGAAGACGGTCTGGCGCCATCGCCGCGCCTGTCCG11.694915254237288No Hit
ATTATACCATAACGAACAGGCCGGGGACAAAAGAAAAGACGGATCATGAC11.694915254237288No Hit
CGCTCAGATAAGCCATCGCAATAACAATGATACCGCCGAAAACGGTCATC11.694915254237288No Hit
AGTACGGATAAAATGCTTGATGGTCGGAAGTGGCATAAATTCCGTCAGCC11.694915254237288No Hit
TGCTGAAGGACTTGATGAAGGATCCCGAATATCAGGATATGATGATGACG11.694915254237288No Hit
GTTTTCGCCCGTTTCAGGGGCATTCTTCTCCGGCTTTTCGTTCCCTTTCA11.694915254237288No Hit
GGATGGTTCAAAGCGGTACCTGGGCATTCCTGCTGTATTGGACCGAGTTG11.694915254237288No Hit
AGGGAATCGTATAATCGAAGATCGTATCATATTTGGCATTCATCAGGCCT11.694915254237288No Hit
AATCTGCAACGCCTTCATCAACATGCCCTTCGTAGCGTTCAATGCCGTTA11.694915254237288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)