FastQCFastQC Report
Tue 10 May 2022
EGAF00003661297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1079175
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG17840.16531146477633377No Hit
GTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCT14160.1312113419973591No Hit
CCTTATACCAGCGTTATGAGATCAAGATGACCAAGATGTATAAAGGGTTC13320.12342761831954967No Hit
GCCCTGGCTCCCGAGGCAGGCAGGCAAGGTGACGGGACTGGAAGCCCTTT12890.11944309310352816No Hit
GGGTGGACACTGTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCT11830.10962077512914958No Hit
GTGCAGGCTTCAGCTTCCACTCCGGGCAGGATTCAGGCTATCTGGGACCG11620.10767484420969722No Hit
ATCTGGGACCGCAGGGACTGCCAGGTGCACAGCCCTGGCTCCCGAGGCAG11250.10424629925637639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)