FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003661317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76
Sequences flagged as poor quality0
Sequence length146
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTAATGATTTCTCATTGAAAAATCTCACAAAATTACTATTGTTTGAT45.263157894736842No Hit
TGTCAGACCTTCATGTCTGACAGGCATGCTGGTTGGCAGGCTGGTTGGTT33.9473684210526314No Hit
TCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCT22.631578947368421No Hit
ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATA22.631578947368421No Hit
AACTAGTAATCAAATGTCTCAAACTACATTACCAGGTCATTAAGCCTAAG22.631578947368421No Hit
GGCTTTTGACCCACACCTGACCAAGCTCACCCCATGCCCTGTCTCACACA22.631578947368421No Hit
CCTTTAAGGCTTTGGAGAGAAAACAGATTAATATTAAATTACTTGTCTCA11.3157894736842104No Hit
TCAACGCAGAGTACATGGGAGAGCTGGTTCCGCGCCGCGGCCGCCGCGAC11.3157894736842104No Hit
TCATTTGATAATGGCAATAATTATGATGCAGTTCAAAGATGAGCAAGTTC11.3157894736842104No Hit
GCATTTGATAATGGCAATAATTATGATGCAGTTCAAAGATGAGCAAGTTC11.3157894736842104No Hit
GTTGGCTCCAAAGGCCTGTAGCGTTGTTCTAATACTTCGGTGATATCTCG11.3157894736842104No Hit
GATTAGAGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAATCTTTAA11.3157894736842104No Hit
TAACACTATATCCAACAACTCAGATATGGCAGAAGTGAAGTCAATGTTCC11.3157894736842104No Hit
GCTTCCGATTGTCTGGCAAAAGGTCTGTGATAAGCAACTCTTTGAAAGTA11.3157894736842104No Hit
ACGCCCATCCCCAGAGACCTCAGTGCATCCTATCATGAACTACACCCGCC11.3157894736842104No Hit
TTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAG11.3157894736842104No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC11.3157894736842104Clontech Universal Primer Mix Long (96% over 26bp)
GGTAAATAATTACCACACGACGCCTTGTAATTACCCAAAACACCACATAT11.3157894736842104No Hit
CCTCTGCAGAACTTGACCCTAGTTTTTCAAATTGGACTCAAGAATGATCT11.3157894736842104No Hit
GGATTATAAAGATTCAAATATAAGACCTCAAACTATAAAAATCTATAAGA11.3157894736842104No Hit
ATTGTGGGGTTGTTAGAAGGAGCATTTGTCATATAGAATGATTGGTGATG11.3157894736842104No Hit
CATTTACTTGTGCTATAATCCAGTCACCCAGACTCCTCTCTATCCTTTTT11.3157894736842104No Hit
CAGTAGTTATAAGCAATCTCCTCATCCAGCGCAAAGAAAAGGGGCTTCCC11.3157894736842104No Hit
GTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATAAT11.3157894736842104No Hit
GTTACTAAACTCAACAGCAGCTCCAGCTCCAGCCCAGGCCTTTAAACTTT11.3157894736842104No Hit
CCTGAATAAGATTGTAACAGTCATGATTTCCACCATACTACAATTATTGT11.3157894736842104No Hit
GGCCAGGCCAGAGTATCTCTATTTTTCTAATTCAGTTTGACTAAAACTTT11.3157894736842104No Hit
GACAAAACACCACGCTCACACCACACGCACACCACCGAACAAAGAACAGG11.3157894736842104No Hit
CTACACATAACACGTGTGTAAGACTTTTTTTTGAACAAAAAATAGAATCA11.3157894736842104No Hit
TCATAAGGGCTATCGTAGTTTTCTGGGGTAGAAAATGTAGCCCATTTCTT11.3157894736842104No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAA11.3157894736842104No Hit
AAAAGAAATGAGCCTTATGATGCAAAACACGTTTGATAATTCTTACTCCC11.3157894736842104No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG11.3157894736842104No Hit
CCCCTGGACCCTCTGCGCGGCGGCTGCGACCTGCCGGCGGTCCCCGGGCC11.3157894736842104No Hit
ATTATAGGCCAGTGATGTCTCAAAGAGTAGAGGAGCGTCTACTGGTCTTT11.3157894736842104No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG11.3157894736842104No Hit
GCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTC11.3157894736842104No Hit
GTCTCAAGGTACTAAAAAAAGAGCCCAAGGCCAGTACTCGGTGCTTGGAC11.3157894736842104No Hit
CTTGGATATTTCACCATCCTCTCACAAAAATAAACACTCTGGTACCCAGT11.3157894736842104No Hit
GAAAGAAGCCTATGACTTGAGTCCTAGTCTCTTAACCAACAATCACCATA11.3157894736842104No Hit
GTAGAGCAGATTCATGAAATGAATTTTAAAAAGTGATTGCCACTTGGTGT11.3157894736842104No Hit
GAAATAAATCATTTTAAAAGTTCTCAGAAAACCTATTTATGTCATCTTTG11.3157894736842104No Hit
AAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCA11.3157894736842104No Hit
CCACCTATGTCATTCAATTTTCTAAGAGGCAAAATCCTTAATCAGGAGGA11.3157894736842104No Hit
GATTAGTGGTCTTGGGGCCGAAACGATCTCAACCTATTCTCAAACTTTAA11.3157894736842104No Hit
GTCCTCCACCCAATTTCAGCTGGTCTGTCCTCATCAGCTTTGGGCTGAGC11.3157894736842104No Hit
CCATATGACATTTGTCTCAAAGCACTGTTCATCACTGCTTGTCTCTGAAA11.3157894736842104No Hit
CTTTGAAGTTTTGTTACTGAAAAGTTACCCAAAAAATACAAGTAAAACTT11.3157894736842104No Hit
GGAACTTTTGTTAGGAAAAAATTGAAAGAACTAAAGTCTCGAATGTAATT11.3157894736842104No Hit
ATTGTAACCCTTGTGGGTTGCTAATAACCAAGCAGTTTGTAGCAGATAGA11.3157894736842104No Hit
CTTTAGGAGAGATTCTGTTTGTTTTTTAAAGAGCCAAGCCAAAATTTTTT11.3157894736842104No Hit
CCTGAAAGACGCAGCCTCTGAAATGAATATTGAAGACTGGGGAGGATTTA11.3157894736842104No Hit
ATTGTACTGTAAGATTAGGAAACTCAGAAATTTGTTTGCATAAACAATTT11.3157894736842104No Hit
ACAGAACACACATAATATAAGCAATGAGGAACACACAAAGAGTATGTGTC11.3157894736842104No Hit
CGTCACCCTCACAGGGATGGCCACGGGGACTGTTATTCGCAAGCTGGTGT11.3157894736842104No Hit
CTATCGTGTGTAATATCAGCTGCCGTTACAGTTCCTTCACCCTGTACATC11.3157894736842104No Hit
GACAAAACACCACGCTCACACCACACGCACACCACAGAACAAAGAACAGG11.3157894736842104No Hit
CGGCATGCGGCTCAACAGCAACCAGCGACTGGGCTGGGGCAGCTGGCTGG11.3157894736842104No Hit
CATGGCTGTACTCTTTCCCTACACGACGCTCTTCCGTTCTCTGGTCCCTG11.3157894736842104Illumina Single End PCR Primer 1 (96% over 31bp)
CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCT11.3157894736842104No Hit
TTGCTGCATTCCGCTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATT11.3157894736842104No Hit
ATCTTGCTGAAGGCAGGCCAGGGTGACAGCAAAAGTAGGGGATGAGAAAT11.3157894736842104No Hit
GTAGAGCAGATTCATGAAATGAAGTTTAAAAAGTGATTGCCACTTGGTGT11.3157894736842104No Hit
GCCTTGGGGTCCACGGCGGCCTTGAAGGCAGCGCCCGGCACGAACTTCGG11.3157894736842104No Hit
GCGTCAGATGTGTATAAGAGACAGGCTTCCCATGTACTCTGCGTTGATAC11.3157894736842104No Hit
ACCTGCAGTTTCGTGGCTCCCTGGAACAGCCTGAGCTTAGCTCAGCGCCG11.3157894736842104No Hit
GTGCTACAGCTCTTAAAGGTGGCGCGTCTGGAGTTGTTTATTCCTCTTGG11.3157894736842104No Hit

[OK]Adapter Content

Adapter graph