FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003661370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003661370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length146
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCGCCGGACCGGTACACCGTCTTCTGGCCGGTGAGGCCGATCTCGC36.8181818181818175No Hit
CTGCTGGCGCCGAGGCCCAGCAGCATCGCGAAACTGGCGGTGCGTAACCG36.8181818181818175No Hit
TCATCGGCTAGGCCTTCACGGCCGTGGAGCCGGCGGACTCGGAGCCGGCC24.545454545454546No Hit
CGGCGCGAGCACGCTGGTGCCGTTGCAGATGCCCAGCATCTCTCGCTCCG24.545454545454546No Hit
GCGGATCACTTGAGGTCAGGAGTTTGAGATCAGCCTGGCCCTGTCTCTTA24.545454545454546No Hit
ATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATC24.545454545454546No Hit
GTGCTGCAGCATTCCGCAATACTTGTCAGAAAAAGGAAAAGAAGCCTCTC24.545454545454546No Hit
GATGACGAGCAGGGGGATGCTGGCGGCGTCGGCCTCACTGACGGCCGGGT24.545454545454546No Hit
GGGCAAAGCACACGTCGAGTGGAAAATCACGCGCGGTGGGGAGCGGCGAA24.545454545454546No Hit
CTATCCAGCAGCGCGACGCCCTGGCCGACGTGGGCGACACGTCGGATGCC12.272727272727273No Hit
TCGCCGGTGATGCGGCCGGCGCTGCCGGCATCCTCGACCACCAGCTCGAT12.272727272727273No Hit
GAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGA12.272727272727273No Hit
CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC12.272727272727273No Hit
CGATCGCCGCGGGCATCGGCATCATCTTCCAGGAGTTCAGCCTCATCCCG12.272727272727273No Hit
CATCAGCAGCGTGCGGCCCTCTGCTGCCAGTTCTCCCACAAGTGCAATGA12.272727272727273No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT12.272727272727273No Hit
GCCCGACTTCGACAGCGCCGGCGTCTTCGAGAAGCACATGTACATGAAGA12.272727272727273No Hit
CGTCTGGCACTTATTCAGCCAAACTTCAGGCCCCCCTTCTGAGAAGGATC12.272727272727273No Hit
GCGTCAGCAACTGGCCTTCGCCCGCGCCCTGATGTCCAGGCCGAGCCTGA12.272727272727273No Hit
GTGCTAGTGACCATGGGGGCAGTCCAGACAGAATTGCCTCCCAAGGACCT12.272727272727273No Hit
CCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGG12.272727272727273No Hit
GAATGGAAGCGCAAGCCTTTGGGGACATTGGGCGGCTTGCAATGGGTTGA12.272727272727273No Hit
ATTCGCGGCAGAGACCTGCGTTCGGCGGTGCAGGACATGCAGCGCGTCGT12.272727272727273No Hit
GTGCGCACCTGCCACCAAGGCAGATCTGGCGGAACGTGGCGAAGCTGGCC12.272727272727273No Hit
GGATGGGGACTTCTCTCTTCTCTTACAAAGCGGAGCAGAGTTTGTGCTGC12.272727272727273No Hit
GTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCT12.272727272727273No Hit
ACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCC12.272727272727273No Hit
CCACCTGCTCCTCCATCGCCGCCAGCATCACCCGCTGCTGGCTCAGGGCG12.272727272727273No Hit
GTCCAAGCTCGCGGCCGAGCGCATGGTGCGCCAGGGCGGCGGCCGGCTGA12.272727272727273No Hit
GCTTGGAAGCGTTATATATCGCCACATCCGTGGTGGTTTCGTGCCTGAGC12.272727272727273No Hit
GTGATAAAGCAAGTGCTTTAGATTTAATCAAGTCTGCCATTAACGGTAAG12.272727272727273No Hit
CACGACCAGGGCCACGGCCAGGATGGCCAGCAGGAGCAGCGGGGCGCGCA12.272727272727273No Hit
GACCACCGGTCCGAAGCGCGCCACTTCCTGCTGCACGAACTTCCTGTGCT12.272727272727273No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)