FastQCFastQC Report
Tue 10 May 2022
EGAF00003662002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46660
Sequences flagged as poor quality0
Sequence length146
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1150.24646378054007717No Hit
ACCTGGAACTGCTCGTCGCGCTGTCGGAAACGGCCACGATGCGCGGCGCC1030.22074582083154737No Hit
GTACTGCCCCATGTCGAGGACGCGCACACCTTCGAGCGGAGCCGCGGGGC660.14144877839691383No Hit
GTTGAGCACCGCGCGGGCGTGGAAGACTGCGCCGGCCCCGAGGGCGTTGG640.13716245177882555No Hit
GTACATGGGAGCAGCCGCTGGATGAGTTCCTGCACGCGGCCCTCGCGCAG630.1350192884697814No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC610.13073296185169309No Hit
GTACATGGGGGTGCGCGTGTCCGACGTGCGCGGCCGCCAGGTGACGACCA560.12001714530647237No Hit
GTTCCAGGTGGCGCAACCGCAGCTTGCGCACGAGGTGGTCGGTCTTGCTG550.11787398199742821No Hit
GCGATGTACTGCCCCATGTCGAGGACGCGCACACCTTCGAGCGGAGCCGC540.11573081868838406No Hit
GGGTATAGAGGTTGAGCGCGACGTTCACCAGGTCGAGATTGCCGGTGCGC540.11573081868838406No Hit
CCCATGGACAGCAAGACCGACCACCTCGTGCGCAAGCTGCGGTTGCGCCA520.11144449207029575No Hit
GACCTTATCGGCCTGGGCGATTCTTGAAAATTCGATAATCGTGAGGGAGT510.10930132876125162No Hit
TTATCGGCCTGGGCGATTCTTGAAAATTCGATAATCGTGAGGGAGTGATC490.10501500214316331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)