FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003662273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGTCCTCA43.669724770642202No Hit
GCATGGCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGCTTCTAAAT32.7522935779816518No Hit
TATCAACGCAGAGTACATGGGCGGCGACCACCTGTCTCTTATACACATCT32.7522935779816518No Hit
GATCTACACTTTTTTTTTCGTCGGCAAAAAAAAAAAAAAAAAAAAAAAAA21.834862385321101No Hit
GGTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCG21.834862385321101No Hit
GAGTACATGGGGCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGC21.834862385321101No Hit
GGCTGGAGCAGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGA21.834862385321101No Hit
GGTGGGCAGCGTCTTGTCCTCAGGTGTAGATGCTCCAGTCTCGGCTCAGC21.834862385321101No Hit
GTCCTCAGGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGG21.834862385321101No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.834862385321101Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATT21.834862385321101No Hit
ATGAAGCTCGCCGCCCTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTC21.834862385321101No Hit
GCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGCTTCTAAATGCTAA21.834862385321101No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAA10.9174311926605505No Hit
CCCTCATGTCTTGATCAGGGCTGAAAAGTTCCATGGCAGCCTCATAACCT10.9174311926605505No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGTGGCGCAATACGA10.9174311926605505No Hit
CTCCTGTGGCCTACCCATTCCCTTGCTCATTTTTCTCTGACATTTTTCAA10.9174311926605505No Hit
GTACATGGGCCACCGAGATCTACACTTTTTTTTTCGTCGGCAGCGTCAGA10.9174311926605505No Hit
GAGCAGGACTCCAGAGCCTCCTCCATATGGCAGGAATCAAGCTTTCACAG10.9174311926605505No Hit
GGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGC10.9174311926605505No Hit
CTCTTAACCACGTTTATTGAGAGGGGCCGGGGGAAGGGGATGGACGGTCC10.9174311926605505No Hit
CTTGCAGACTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAAAAGAAA10.9174311926605505No Hit
GCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGGCCGGGGCCGGGACCCTGG10.9174311926605505No Hit
CAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCG10.9174311926605505No Hit
GGACCCTGGCCAACCCCCTCGGCACCCTCAACCCGCTGAAGCTCCTGCTG10.9174311926605505No Hit
ATGATAAAGAGTTCAATTCAACAAGAAGATTTAACTAGCCTAAACATATA10.9174311926605505No Hit
AAACACGACAGGTGTGTCCATTGGACAACAGAGAGTGGGAATTCCAAAAG10.9174311926605505No Hit
GCATTCTTATACTCCAATAACAGACAAACAGAGAGCCAAATCATGAGTGA10.9174311926605505No Hit
GTACATGGGCAAGCAGAAGACGGCATACGAGATATGCTTCGTGTCTGGCG10.9174311926605505Illumina PCR Primer Index 10 (96% over 29bp)
CCCACGGCCTGGGGACCCAGCTCAGCCACACACTTCTGGGAGCCCTCTAT10.9174311926605505No Hit
GTAGATCTCGGTGGTCGCCCCATGTACTCTGCGTTGATCTGTCTCTTATA10.9174311926605505No Hit
ACTCTGAGCCCCAGGAGAAATTCCCCACGTCCAACCTCAGGGCACGGTAT10.9174311926605505No Hit
GCCTGGGCATCCCCGTGAACCACCTCATAGAGGGCTCCCCCAAGTGTGTG10.9174311926605505No Hit
CCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACT10.9174311926605505No Hit
TTACTGGAATTTTCCAAACATCAAATGAAGGGGGATCAATGGTTACCACT10.9174311926605505No Hit
CCAGAGCCTCCTCCATATGGCAGGAATCAAGCTTTCACAGGGGAAACGCA10.9174311926605505No Hit
ATGAAGCTCGCCGCCCGCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGCTC10.9174311926605505No Hit
GATACTAGCCCACCAGACTCAGAGACGGAACCAGAGACGGGCCAGAGCAT10.9174311926605505No Hit
TATCAACGCAGAGTACATGGGGGCAATGGGCGAAAGCCTGACCGAGCAAC10.9174311926605505No Hit
GCCCACCAGACTCAGAGACGGAACCAGAGACGGGCCAGAGCATCCCCCTC10.9174311926605505No Hit
GTACATGGGAAGGGAGGTTGGTGTTCGCATCAGGCAGAGGTTCAAATCTC10.9174311926605505No Hit
ACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTC10.9174311926605505No Hit
CCCAGAAGTGTGTGGCTGAGCTGGGTCCCCAGGCCGTGGGGGCCGTGAGG10.9174311926605505No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG10.9174311926605505No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA10.9174311926605505No Hit
GGTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTGC10.9174311926605505No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.9174311926605505No Hit
CTGGGCAGATTTCTTAGGAGGACAGACTCCAGCTTTGAAGGACTTTCCAG10.9174311926605505No Hit
GTCTTGTCCTCAGGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGT10.9174311926605505No Hit
GTACATGGGAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTG10.9174311926605505No Hit
CCTGTAGGCTGGCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGT10.9174311926605505No Hit
CTCCTGGGCTGCTGGATTGTCTCGTTTTCCTGCCAAATAAACAGGATCAG10.9174311926605505No Hit
GCAGCTGCCCTTTGTAGACATATTCCAGTGCAGTGGCAATGGTGCGCATG10.9174311926605505No Hit
GGGCATCCCCGTGAACCACCTCATAGAGGGCTCCCAGAAGTGTGTGGCTG10.9174311926605505No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGAGCTG10.9174311926605505No Hit
TGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGATTTTGCGCCGGCTG10.9174311926605505No Hit
ACCTTAAGAGAGTCATAGTTACTCCCGCCGCTTACCCGCGCTTCATTGAA10.9174311926605505No Hit
GCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGC10.9174311926605505No Hit
GCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGA10.9174311926605505No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCC10.9174311926605505No Hit
CAACGCAGAGTACATGGGACCTCAAAACCGACATGCCGTAATGATCTAGT10.9174311926605505No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTCAGATGCTCATGGAAAAAATAGC10.9174311926605505No Hit
ATTTCCCACACATGCCCATGCAACACTTCAAGTCACGCTTGCCCTGGGAA10.9174311926605505No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCACACCA10.9174311926605505No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA10.9174311926605505No Hit
ACGCAGAGTACATGGGTACGGCGACCACCGAGATCCTGTCTCTTATACAC10.9174311926605505Illumina Single End PCR Primer 1 (95% over 21bp)
TAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCT10.9174311926605505No Hit
CCCGTGAACCACCTCATAGAGGGCTCCCAGAAGTGTGTGGCTGAGCTGGG10.9174311926605505No Hit
GATCTACACTCTTTTTTTCGTCGGCAAAAAAAAAAAAAAAAAAAAAAAAA10.9174311926605505No Hit
ACTGTGTTCTCCCTGGCATTCAGAGAGGAGGGAGAGGAGGAAGAGGAAGG10.9174311926605505No Hit
CACTATAATAGTTTGCATTTGTTGAGACAACCTTTGCCATTATTCTGTTT10.9174311926605505No Hit
TTATTGAAGAGAGCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGG10.9174311926605505No Hit
GTATCAACGCAGAGTACATGGGATCCCAATGGTGCAGCCGCTATTAAAGG10.9174311926605505No Hit
GCGGGAGAGAGGCCGAGATGGCAGATGAGATTGCCAAGGCTCAGGTCGCT10.9174311926605505No Hit
CCCCAGCAGGGCCTTCAGGGCCTTCACTGCCCCCACGGCCTGGGGACCCA10.9174311926605505No Hit
CATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGGGTGTCA10.9174311926605505No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTAAA10.9174311926605505No Hit
GGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGC10.9174311926605505No Hit
CCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGG10.9174311926605505No Hit
GAAGCAGTGGTATCAACCCAAAAAAAAAAAAAAAAAAAAGTAATCCTGTC10.9174311926605505No Hit
CATGTCTTGATCAGGGCTGAAAAGTTCCATGGCAGCCTCATAACTGGAGG10.9174311926605505No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA10.9174311926605505No Hit
GTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGGTTCACGGGGATGCCCAGG10.9174311926605505No Hit
TTATCACCTAATGATTCGTAGTCGCATGAAGATGCAAAAACACAGCCCAA10.9174311926605505No Hit
GTACATGGGAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCA10.9174311926605505No Hit
GAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGG10.9174311926605505No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.9174311926605505Clontech Universal Primer Mix Long (96% over 25bp)
CTTGTTGCCCAGGCTGGAGTGTAATGGCGTGATCTCGGCTCACCACAACC10.9174311926605505No Hit
CTTGCAGACTTAACAAAAAGAGTGTTTCCTAACTGCTCTATGAAAAGAAA10.9174311926605505No Hit
GGTGTACGATTTGACCAAATTTCTGGAAGAGCATCCTGGTGGGGAAGAAG10.9174311926605505No Hit
GCCATGCTTTGAGTCCACGCCCACCAGCCTTGCTCTCTTCAATAAACCAC10.9174311926605505No Hit
CCCTGAAGGCCCTGCTGGGGGCCCTGACAGTGTTTGGCTGAGCCGAGACT10.9174311926605505No Hit

[FAIL]Adapter Content

Adapter graph