FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003662275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT54.672897196261682No Hit
CTCCTCCACCATGAAACTCGCTGTCACCCTCACCCTGGTCACACTGGCTC32.803738317757009No Hit
GCTCAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTT32.803738317757009No Hit
CGCATGGCACGTGTCTTCTTAGGCCGCAGGTCCAGGGGCTTGTACTTCTT21.8691588785046727No Hit
GGTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCG21.8691588785046727No Hit
CTATTGATACTGGACTGGGGGAAGGGTCGGCATCGGGCTCGATATCAATT21.8691588785046727No Hit
CCTTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAG21.8691588785046727No Hit
GTGTAATTAGCATTTAGAAGCTGAAGATCCCCAACTGCTAATTACACAGT21.8691588785046727No Hit
GGGCAGCTGCTGGGAAGCGAGGCACAAGTCTGTGCCCCTACTCCCAGGGC21.8691588785046727No Hit
ATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAAGCTACA21.8691588785046727No Hit
ATACACACATCACAAACAAGTTTCTGAGAATGCTTCTGTCTAGTTTTTAT21.8691588785046727No Hit
TAGTTCCCCCGAGCATGGAAGTATTTGTCTGAGCCGATGTAATTGGCTTC21.8691588785046727No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTATAAAAACTGT21.8691588785046727No Hit
GCGGGAGAGAGGCCGAGATGGCAGATGAGATTGCCAAGGCTCAGGTCGCT21.8691588785046727No Hit
GTTAGGCCCTTGGCACCGAGAATTCCACAAAAAAAAAAAAAAAAAAAAAA21.8691588785046727No Hit
GTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAGGCTTTTGATGGG10.9345794392523363No Hit
GCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAAC10.9345794392523363No Hit
GGGCAGCGTCTTGTCCTCAGGTGTAGATGCTCCAGTCTCGGCTCAGCCAA10.9345794392523363No Hit
GCCTGTGGCCCAGCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGGCCGGGG10.9345794392523363No Hit
TGCTTGTGGTTTATTGAAGAGAGCAAGGCTGGTGGGCGTGGACTCAAAGC10.9345794392523363No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.9345794392523363No Hit
GTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCGGGAATTGCATCT10.9345794392523363No Hit
TTCTTAAACATCTCAAACATAAACTCTTAATAAAATCTGAACATAAATTA10.9345794392523363No Hit
AGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGC10.9345794392523363No Hit
GGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGC10.9345794392523363No Hit
TTCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCC10.9345794392523363No Hit
GACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCCTCACTGGG10.9345794392523363No Hit
GCCTGGGGACCCAGCTCAGCCACACACTTCTGGGAGCCCTCTATGAGGTG10.9345794392523363No Hit
GGACCCTGTGATGATTGTGTTAACTGCACAAATTGTTTGTAAAACATGTG10.9345794392523363No Hit
CCACCGAGATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGAAAAA10.9345794392523363Illumina Single End PCR Primer 1 (95% over 21bp)
GCTTTCTTAGTGGGCTCAGCCAAACACTGTCAGGGCCCCCAGCAGGGCCT10.9345794392523363No Hit
ATCCAAGGATGTCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAG10.9345794392523363No Hit
ATCAACGCAGAGTACATGGGAGTGGACCCTGTGGCCAGGTGCTTTTCCCT10.9345794392523363No Hit
ATTCTGAACTTTCGTATCCAAGTTAGTCCCCCTTATTCCACTGTGGCATT10.9345794392523363No Hit
CCCGCGGAGCGCGCCGGTCTTCGCCTCCGCGTAGGCCTCGAAGCCCTGTC10.9345794392523363No Hit
GGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGC10.9345794392523363No Hit
GCCTTCACGGCCCCCACGGCCAGGGGACCCACCTCAGCCCCACACAACTG10.9345794392523363No Hit
ATGTTATGGCTGATCAGTCATCCACCAGGAACGAAGATTTCCTGAAGAAG10.9345794392523363No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTCGGTTGCAAAAACCCCAATTA10.9345794392523363No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG10.9345794392523363No Hit
CTCCAGAGCCTCCTCCATATGGCAGGAATCAAGCTTTCACAGGGGAAACG10.9345794392523363No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAG10.9345794392523363No Hit
GTACATGGGCAAGCAGAAGACGGCTACGAGATTTTTTTGTGACTGGAGTT10.9345794392523363No Hit
GTATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCATACGAGCTGTCT10.9345794392523363RNA PCR Primer, Index 41 (96% over 27bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTT10.9345794392523363No Hit
GTCTCGGACAGCGAATGCGCCGACAACCTCAAGTGCTGCAGCGCGGGCTG10.9345794392523363No Hit
GGCCGGGGCCGGGACCCTGGCCAACCCCCTCGGCACCCTCAACCCGCTGA10.9345794392523363No Hit
GGCTGGAGCAGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGA10.9345794392523363No Hit
ATTGAAGAGAGCAAGGCTGGTGGGCGTGGACTCAAAGCATGGCAGCGGCA10.9345794392523363No Hit
GTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGCT10.9345794392523363No Hit
ATGTAGATCTCGGGGCGCTACACCCATGTACTCTGCGTTGATACCCTGTC10.9345794392523363No Hit
AACTGTGTGTGAGGGGAAGAGGCCTGTTTCGCTGTCGGGTCTCTAGTTCT10.9345794392523363No Hit
ATCAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTGGACACC10.9345794392523363No Hit
CGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTG10.9345794392523363No Hit
TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGAT10.9345794392523363No Hit
GATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCAAAACTGCCTTAAA10.9345794392523363No Hit
GTATCAACGCAGAGTACATGGGGAGCCGCAGGTTCCCCGTGCGCCCCGAG10.9345794392523363No Hit
CCTTAGTTCATTCTTCTAATAAGCCTGTTGATCTGGTCCTCCCTGTTGCC10.9345794392523363No Hit
GGACACGGATGTCTACACCAGCAAATCGCTCCTTGCCGAGAAGCAGAACT10.9345794392523363No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCT10.9345794392523363Clontech Universal Primer Mix Long (96% over 26bp)
AAAAAGTGTAGATCTCGGGGTCGCCGTATCATTCCTGTCTCTTATACACA10.9345794392523363No Hit
GCATTCCTATTTCTCCACCTCCTCTCCAGCATCTCTTGTTTCCTGACTTT10.9345794392523363No Hit
GACCTGGGGGTGCCTGGGCTGCAGAAGTGATCAGCAATGCCAGAGAGAAT10.9345794392523363No Hit
ATCATAAACTTAACTCTGCAATCCAGCTAGGCATGGGAGGGAACAAGGAA10.9345794392523363No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGACATAAATCGCGTATG10.9345794392523363No Hit
TAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCT10.9345794392523363No Hit
GTTGGGGATCTACAGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGCT10.9345794392523363No Hit
GAGTCAGAAATAACTGGTCTCCTTCTGCTGTCCTTACCTCCTTCTGGTGT10.9345794392523363No Hit
GGTGGAGCCAAGTCTCAGGGTGGAAAGGACCTGGACCACACAGAGCAGGA10.9345794392523363No Hit
GTGGAGGTGTTCGGGCTCCTGGAGGACGAGGAAAATTCACGAATTGTGAG10.9345794392523363No Hit
CTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATCC10.9345794392523363No Hit
ACCCAGCGAGCAGCCAAGCTCAGCGCAACCTCCGGGCTTCTCGCTGGGTC10.9345794392523363No Hit
CATGTCTTGATCAGGGCTGAAAAGTTCCATGGCAGCCTCATAACTGGAGG10.9345794392523363No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTCGAACAAACC10.9345794392523363No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCCTGTCTCTTATA10.9345794392523363No Hit
TCTGGGAGCCCTCTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCAGC10.9345794392523363No Hit
GAATCGGAAGAACTGTCTTCTATTGAACTAGATTCGTCATTTGAAGAATC10.9345794392523363No Hit
AGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAGCAGGG10.9345794392523363No Hit
GTGTAGATCTCGGTGGTCCCCATGTACTCTGCGTTGATACTGTCTCTTAT10.9345794392523363Illumina Single End PCR Primer 1 (95% over 21bp)
CTCCGCACCATGGCCAAAGAATCTCTGGATATTCTCTCTGGCATCGCTGA10.9345794392523363No Hit
ATGTCTAAGTACGCACGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTT10.9345794392523363No Hit
CCCTAGTCTCAGGCACAGGAGCAGAGAAGACTGGCGTGTGCCCCGAGCTC10.9345794392523363No Hit
GAGCCGATGTAATTGGCTTCTCTCATGTCAGAGTAGGCTCTCCACATGTC10.9345794392523363No Hit
GATACGGCGACCACCGAGATCTACACTCTTTTTTTTCGTCGGCAGCGTCA10.9345794392523363Illumina Single End PCR Primer 1 (96% over 31bp)
GTGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAG10.9345794392523363No Hit
ATCTACACCTGAGGACAAGACGCTGCCCACCCGCGAGGGCTGAAAACCCC10.9345794392523363No Hit
CATCGCGTCAACACCCGCCGCGGGCCTTCGCGATGCTTTCCCATGTACCT10.9345794392523363No Hit

[FAIL]Adapter Content

Adapter graph