FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003662276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107
Sequences flagged as poor quality0
Sequence length146
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGAGGGACCCGCAGCTCAGCTACAGCCCAGA32.803738317757009No Hit
AGCTGAGCCCCTGCCTCCCTCATGTCTTGATCAGGGCTGAAAAGTTCCAT32.803738317757009No Hit
GTTGGCGGCTTGTGCAGCAATGGCCAAGATCAAGGCCCGAGATCTTCGCG21.8691588785046727No Hit
CTTCTGCAGAGATCTGCCCGAGCTTTCAGCGTGTCATCGAAACCCTCCTC21.8691588785046727No Hit
GGTTCAATCTGAATCAACAGATGTCTGCCAGTTGGATCGACCCCAAGCTT21.8691588785046727No Hit
CTCTTTTTGTAGAATCTGCAAGTGGATATTTGGATAGCTTTGAAGGTTTC21.8691588785046727No Hit
CCCTTATTCAGGCCCAGATCAGCAGCACATTTCTTGCCAACAATCATTAA21.8691588785046727No Hit
ATGTTATCCTCTGTCATTTGCCCTTCAAAGCTTTCCTTTAGGGTTAAGAT21.8691588785046727No Hit
GGTCTTTGCCACTCCTGCCCCATTCATTGGCAGCCTGATCAGCCAGCGAG21.8691588785046727No Hit
GGCCGTGAAGGCCCTGAAGGCCCTGCTGGGGGCCCTGACAGTGTTTGGCT21.8691588785046727No Hit
TTTTTATACACATCTGACGCTGCCGACGAAAAAAAAAGTGTAGATCCTGT21.8691588785046727No Hit
GGGCCCCCAGCAGGGCCTTCAGGGCCTTCACGGCCCCCACGGCCTGGGGA21.8691588785046727No Hit
AGCCAGGATGGTCTCGATCTCCTGACCTCGTGATGCACCTGCCTTGACCT21.8691588785046727No Hit
TTTATACACATCTGACGCTGCCGACGAAATAATAGAGGGGGGGTGTCGGT10.9345794392523363No Hit
GCCTGTGGCCCAGCCTGTCGCTGCGCTGGAGTCGGCGGCGGAGGCCGGGG10.9345794392523363No Hit
CTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCAGCAGGAGCTTCAGC10.9345794392523363No Hit
GCGTTGATACCACTGCCCCATGTACTCTGCGTTGATACCTGTCTCTTATA10.9345794392523363No Hit
GGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGACA10.9345794392523363No Hit
GTACATGGGAAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGCT10.9345794392523363No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAT10.9345794392523363No Hit
GGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGG10.9345794392523363No Hit
TTGCATGGGCATGTGTGGGAAATCCTGCGTTTCCCCTGTGAAAGCTTGAT10.9345794392523363No Hit
GAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAG10.9345794392523363No Hit
ATCAAAAAGTGGGCAAAGGATATGAACAGAAAATTCTCAAAAGAAGACAT10.9345794392523363No Hit
CATATAACGTCACTCTCACGTAAGGATCACTAGCTCCCAATATATCCTTC10.9345794392523363No Hit
CAATAAAAATTTAACTAAATACATAAAGAACAGCGTAACACCATACATGA10.9345794392523363No Hit
TTTTGCTCTTAACCACGTTTATTGAGAGGGGCCGGGGGAAGGGGATGGAC10.9345794392523363No Hit
CGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCA10.9345794392523363No Hit
CCCCCGCGCCATGAAGCTCGCCGCCCTCCTGGGGCTCTGCGTGGCCCTGT10.9345794392523363No Hit
TCTCACGGGCCTGGTTTTATGCTCCTTGGTCCTGAGTGTCAGCAGCCGAA10.9345794392523363No Hit
ACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCT10.9345794392523363No Hit
TGCAAGAACTAGAGACCCGACAGCGAAACAGGCCTCTTCCCCTCACACAC10.9345794392523363No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGA10.9345794392523363No Hit
GCACACGTCTGAACTCCAGTCACAAAAAAATCTCGTAGCCGTCTTCTGCT10.9345794392523363TruSeq Adapter, Index 5 (96% over 26bp)
CTCCCAGAAGTGTGTGGCTGAGCTGGGTCCCCAGGCCGTGGGGGCCGTGA10.9345794392523363No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.9345794392523363No Hit
CACCTGGGGGCAGGAACCCTCCTTATCATTGGGCAGAGAGCAGAAGGTGG10.9345794392523363No Hit
CTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCC10.9345794392523363No Hit
TGGCAGCTCTGTGGCAGTGGCTGGGTTGGTGGGCACTACAGTCAGGCAGG10.9345794392523363No Hit
CTTCTGGGAGCCCTCTATGAGGTGGTTCACGGGGATGCCCAGGCTGCTCA10.9345794392523363No Hit
TCTCAAGGGCCTGGTTTTCTTCTACTTGGTCCTGAGTGTCAGCAGCCGAA10.9345794392523363No Hit
CTTTATTGAAACGCACACGCGCACACACACAAACACCCCTGTGGATAGGG10.9345794392523363No Hit
GGTGTAGATGCTCCAGTCTCGGCTCAGCCAAACACTGTCAGGGCCCCCAG10.9345794392523363No Hit
GCCTCTGTCGGGACCAGTGCCAGGTGGACAGCCAGTGTCCGAGCTGGGGA10.9345794392523363No Hit
CCTCATGGACACACCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCC10.9345794392523363No Hit
GCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG10.9345794392523363No Hit
GGGTACAGCCGCTCCTTCCGCTGCTGCTTCTTGGTCTTCAGGTTCTCCTC10.9345794392523363No Hit
GAATGATACGGCGACCCCGAGATCTACACTTTTTCTGTCTCTTATACACA10.9345794392523363No Hit
GTACATGGGAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAG10.9345794392523363No Hit
GCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGGGT10.9345794392523363No Hit
ATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACCGCCCTTAGAC10.9345794392523363No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAAAAC10.9345794392523363No Hit
GATTTTAGCAATTACCAAACAAGAACCGTATCTCCTCTTTCTGTGGAGTG10.9345794392523363No Hit
CTTCAGCTGAGCCCCTGCCTCCCTCATGTCTTGATCAGGGCTGAAAAGTT10.9345794392523363No Hit
GGTCGGAAGTGATTGGGGTCTCTGCCACTCCTGCCCCATTTATTGGCAGC10.9345794392523363No Hit
GCCAGATGGGGAGCTAAAAGAAATTCCTGAACCCAACGCGTAAATATTTT10.9345794392523363No Hit
CTGTGGACAACTCGAATAAGTTTGACTTGTGTTTTATCTTAACCACCAGA10.9345794392523363No Hit
CCCAGCTCAGCCACACACTTCTGGGAGCCCTCTATGAGGTGGTTCACGGG10.9345794392523363No Hit
GTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCTTTCTCTGGGC10.9345794392523363No Hit
GCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGAGGCAGGGGCTCA10.9345794392523363No Hit
ACTCAAAGCATGGCAGCGGCAGAGGCTGGAGCAGTTGGGGATCTTCAGCT10.9345794392523363No Hit
GTCCTGAGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAGGCTTT10.9345794392523363No Hit
GGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACC10.9345794392523363No Hit
ATGTAGGGAAAACATTTTACATCCTGGTGTCCCTTATCTACTCAAGATGT10.9345794392523363No Hit
ACACAGAGCAGGACTCCAGAGCCTCCTCCATATGGCAGGAATCAAGCTTT10.9345794392523363No Hit
TTCTTAGTGGGCTCGGCCAAGCCTGTGGCCCAGCCTGTCGCTGCGCTGGA10.9345794392523363No Hit
GTCTAGTCCACGCTCGGAGCCATGCCGTCCAAGGGCCCGCTGCAGTCTGT10.9345794392523363No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGCT10.9345794392523363Clontech Universal Primer Mix Long (96% over 26bp)
GCATAAGGCAGACACTTCCAGAGCGGCCGTCCATAGACCTCCCCTGGGAA10.9345794392523363No Hit
GCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAA10.9345794392523363No Hit
GCTGAGCTGGGTCCCCAGGCCGTGGGGGCCGTGAAGGCCCTGAAGGCCCT10.9345794392523363No Hit
GCTGCTTTCTTAGTGGGCTCGGCCAAGCCTGTGGCCCAGCCTGTCGCTGC10.9345794392523363No Hit
GTCCAAGAATTTCACCTCTAGCGGCGCAAGACGGACCAGAGCGAAAGCAT10.9345794392523363No Hit
AGCTTCTAAATGCTAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGA10.9345794392523363No Hit
TATCAACGCAGAGTACATGGGGACCACCGAGATCTACACCTGTCTCTTAT10.9345794392523363No Hit
CTCGTATGCCGTCTTCTGCTTGCCCATGTACTCTGCGTTGATACCTGTCT10.9345794392523363Illumina Single End Adapter 1 (100% over 22bp)
GGCACGGCGACTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGA10.9345794392523363No Hit
GGCTTCGAGGCCTACGCGGAGGCGAAGACCGGCGCGCTCCGCGGGCTGTC10.9345794392523363No Hit
TATCAACGCAGAGTACATGGGGTGATTGCCACCGAAAAAAAAAAAAAAAA10.9345794392523363No Hit
CTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGA10.9345794392523363No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA10.9345794392523363No Hit
GCCGATCAGGCACCCCCAGGTCCCCTTTTGGCAGCATCATAGTTCCCCCG10.9345794392523363No Hit
GATTGTGACAGACCATTCCCATCGGCCAAGTGGTCGAACCCGACATCCAA10.9345794392523363No Hit
ACAGGGTATCAACGCAGAGTACATGGGTGTAGCGCCCCGAGATCTACATC10.9345794392523363No Hit
TTTCCACTCATTCGATGAAGCAGCACGTGAGTTTTCGTTGGTACAAATGC10.9345794392523363No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCTTA10.9345794392523363No Hit
CCCTCAACCCGCTGAAGCTCCTGCTGAGCAGCCTGGGCATCCCCGTGAAC10.9345794392523363No Hit
CCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACAT10.9345794392523363No Hit
GTTATGAGGCTGCCATGGAACTTTTCAGCCCTGATCAAGACATGAGGGAG10.9345794392523363No Hit
AACCAGAGACGGGCCAGAGCATCCCCCTCCTCCACCATGAAACTCGCTGT10.9345794392523363No Hit
TCGCTACAGCATGGTGGCCTACTGGAGACAGGCTGGACTCAGCTTCATCC10.9345794392523363No Hit
TCACACTGAATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAG10.9345794392523363No Hit

[FAIL]Adapter Content

Adapter graph