FastQCFastQC Report
Tue 10 May 2022
EGAF00003662615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003662615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6400
Sequences flagged as poor quality0
Sequence length146
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG100.15625No Hit
TTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTA80.125No Hit
CATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGA80.125No Hit
GAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTTCAAGAC80.125No Hit
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC80.125No Hit
GGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACGGAATGTG70.10937500000000001No Hit
GGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCT70.10937500000000001No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG70.10937500000000001No Hit
CCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCT70.10937500000000001No Hit
ACTCTAGACTGATACCTCCTCATGAAATTTCTGCAGACGTCGCGCCATCG70.10937500000000001No Hit
GACCCAGACCTGGGCGGGCTCCCACTCCATGAGGTATTTCTACACCTCCG70.10937500000000001No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC70.10937500000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)